LOCUS BC020505 3268 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens histone deacetylase 7, mRNA (cDNA clone
IMAGE:3851375), partial cds.
ACCESSION BC020505
VERSION BC020505.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3268)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3268)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC020505.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: m Column: 24.
FEATURES Location/Qualifiers
source 1..3268
/db_xref="H-InvDB:HIT000038794"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3851375"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3268
/gene="HDAC7"
/gene_synonym="DKFZP586J0917"
/gene_synonym="HD7A"
/db_xref="GeneID:51564"
/db_xref="HGNC:HGNC:14067"
/db_xref="MIM:606542"
CDS <1..2138
/gene="HDAC7"
/gene_synonym="DKFZP586J0917"
/gene_synonym="HD7A"
/codon_start=3
/product="HDAC7 protein"
/protein_id="AAH20505.2"
/db_xref="GeneID:51564"
/db_xref="HGNC:HGNC:14067"
/db_xref="MIM:606542"
/translation="PFALPTVSLLPAITLGLPAPARADSDRRTHPTLGPRGPILGSPH
TPLFLPHGLEPEAGGTLPSRLQPILLLDPSGSHAPLLTVPGLGPLPFHFAQSLMTTER
LSGSGLHWPLSRTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKPSEKPRLR
QIPSAEDLETDGGGPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQVLLWEQQRLAGR
LPRGSTGDTVLLPLAQGGHRPLSRAQSSPAAPASLSAPEPASQARVLSSSETPARTLP
FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLE
ELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELH
SSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQ
LQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGA
GSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP
APLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD
PLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLASCPDSWVPRVPGADKEEVEAV
TALASLSVGILAEDRPSEQLVEEEEPMNL"
BASE COUNT 624 a 1030 c 970 g 644 t
ORIGIN
1 ccccgttcgc cttgccgaca gtgtccttgc tgcccgcaat cactctgggg ctgcccgccc
61 ctgccagggc tgacagtgac cgcaggaccc atccgactct gggccctcgg gggccaatcc
121 tggggagccc ccacactccc ctcttcctgc cccatggctt ggagcccgag gctgggggca
181 ccttgccctc tcgcctgcag cccattctcc tcctggaccc ctcaggctct catgccccgc
241 tgctgactgt gcccgggctt gggcccttgc ccttccactt tgcccagtcc ttaatgacca
301 ccgagcggct ctctgggtca ggcctccact ggccactgag ccggactcgc tcagagcccc
361 tgccccccag tgccaccgct cccccaccgc cgggccccat gcagccccgc ctggagcagc
421 tcaaaactca cgtccaggtg atcaagaggt cagccaagcc gagtgagaag ccccggctgc
481 ggcagatacc ctcggctgaa gacctggaga cagatggcgg gggaccgggc caggtggtgg
541 acgatggcct ggagcacagg gagctgggcc atgggcagcc tgaggccaga ggccccgctc
601 ctctccagca gcaccctcag gtgttgctct gggaacagca gcgactggct gggcggctcc
661 cccggggcag caccggggac actgtgctgc ttcctctggc ccagggtggg caccggcctc
721 tgtcccgggc tcagtcttcc ccagccgcac ctgcctcact gtcagcccca gagcctgcca
781 gccaggcccg agtcctctcc agctcagaga cccctgccag gaccctgccc ttcaccacag
841 ggctgatcta tgactcggtc atgctgaagc accagtgctc ctgcggtgac aacagcaggc
901 acccggagca cgccggccgc atccagagca tctggtcccg gctgcaggag cgggggctcc
961 ggagccagtg tgagtgtctc cgaggccgga aggcctccct ggaagagctg cagtcggtcc
1021 actctgagcg gcacgtgctc ctctacggca ccaacccgct cagccgcctc aaactggaca
1081 acgggaagct ggcagggctc ctggcacagc ggatgtttgt gatgctgccc tgtggtgggg
1141 ttggggtgga cactgacacc atctggaatg agcttcattc ttccaatgca gcccgctggg
1201 ccgctggcag tgtcactgac ctcgccttca aagtggcttc tcgtgagcta aagaatggtt
1261 tcgctgtggt gcggccccca ggacaccatg cagatcattc aacagccatg ggcttctgct
1321 tcttcaactc agtggccatc gcctgccggc agctgcaaca gcagagcaag gccagcaaga
1381 tcctcattgt agactgggac gtgcaccatg gcaacggcac ccagcaaacc ttctaccaag
1441 accccagtgt gctctacatc tccctgcatc gccatgacga cggcaacttc ttcccgggga
1501 gtggggctgt ggatgaggta ggggctggca gcggtgaggg cttcaatgtc aatgtggcct
1561 gggctggagg tctggacccc cccatggggg atcctgagta cctggctgct ttcaggatag
1621 tcgtgatgcc catcgcccga gagttctctc cagacctagt cctggtgtct gctggatttg
1681 atgctgctga gggtcacccg gccccactgg gtggctacca tgtttctgcc aaatgttttg
1741 gatacatgac gcagcaactg atgaacctgg caggaggcgc agtggtgctg gccttggagg
1801 gtggccatga cctcacagcc atctgtgacg cctctgaggc ctgtgtggct gctcttctgg
1861 gtaacagggt ggatcccctt tcagaagaag gctggaaaca gaaacccaac ctcaatgcca
1921 tccgctctct ggaggccgtg atccgggtgc acagtaaata ctggggctgc atgcagcgcc
1981 tggcctcctg tccagactcc tgggtgccta gagtgccagg ggctgacaaa gaagaagtgg
2041 aggcagtgac cgcactggcg tccctctctg tgggcatcct ggctgaagat aggccctcgg
2101 agcagctggt ggaggaggaa gaacctatga atctctaagg ctctggaacc atctgcccgc
2161 ccaccatgcc cttgggacct ggttctcttc taacccctgg caatagcccc cattcctggg
2221 tctttagaga tcctgtgggc aagtagttgg aaccagagaa cagcctgcct gctttgacag
2281 ttatcccagg gagcgtgaga aaatccctgg gtctagaatg ggaactggag aggaccctga
2341 gaggagacgg gctgggcggc gacccccaca gggctctcga gaacagattc tcccctccag
2401 tatgggccct ggctgtggcc cccattcctc aggactgcac agaggaggac tggctccggc
2461 tccgtcgggc tcacccttaa ccactattcc tggctctgca aaccccagac tttgcacaca
2521 gcctcaggct ccacacagaa atgtgaactt ggcctcagac aggctggccc ttcctaggct
2581 ctaggggcta ggggggagtg gggagccaag aggtcccata ttcctgagtg caggggtagt
2641 ccctctcacc tgcttcctca gacgactctg gaagcttccc tctaccactg ggcactgaga
2701 cgaagctccc tgacagccga gactggcagc cctccatctg gtccgtaccc tcgccagagg
2761 cccccctaca tcaacctcct ggcgatgccc tggtggagca gatgggtgct ctgggagtcc
2821 tgtgcttcct gatccaatgg tgccaaaccc ttcatctccc caagaagcgc agcatacccc
2881 tgggacccct cggccactgc ccactcgggg agccttctct gtttctgggg cctcccccac
2941 catagctctg attcccaccc cacataggag tagcctgact gagggggaag gggtgggaga
3001 gaagatacag acatggagga ggggaggctg ctctggcaaa gtcttcaagg cttttggggg
3061 tccaggcctg gggtcaagaa ggaaaatgtg tgtgagcatg tgtgtgagtg aggcgtgtgt
3121 gtgagcgtgt gtgtgagtga ggcgtgtgtg tgtgtctttc ctaggaccca ccataccctg
3181 tgtatgtatg catgtttttg taaaaaggaa gaaaatggaa aaaaatctga acaataaatg
3241 ttttatttgc tttaaaaaaa aaaaaaaa
//