LOCUS BC020264 2911 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens HERPUD family member 2, mRNA (cDNA clone MGC:32126
IMAGE:4878523), complete cds.
ACCESSION BC020264
VERSION BC020264.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2911)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2911)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377616.
FEATURES Location/Qualifiers
source 1..2911
/db_xref="H-InvDB:HIT000050737"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32126 IMAGE:4878523"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2911
/gene="HERPUD2"
/gene_synonym="FLJ22313"
/db_xref="GeneID:64224"
/db_xref="HGNC:HGNC:21915"
CDS 617..1837
/gene="HERPUD2"
/gene_synonym="FLJ22313"
/codon_start=1
/product="HERPUD family member 2"
/protein_id="AAH20264.1"
/db_xref="GeneID:64224"
/db_xref="HGNC:HGNC:21915"
/translation="MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNV
YPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRE
SHEALTSSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFP
YVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNV
NPTQPTTSQPLNLAHVPGEEPPPAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDW
LDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNN
NAEVNNDGQNANNLELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTF
FTSLIPEGPPQVAN"
BASE COUNT 807 a 708 c 663 g 733 t
ORIGIN
1 cgccagcggt ggcgcaacgg ctctcgtccc cgccctcctg ctacctgtag tcgcctgggc
61 cgcccccggc ccagccctgc cttgcgccac cctgcgctgt ccagactgag gggtcaggcg
121 gagagccggg ccgcgccctt cggtcagctt ctctcccttt cacccgcgcc tcctcgcgag
181 acccggggct gggccgtgcc cgtcgccgcg cagcaggaag ggagcggctg ccacggaaaa
241 cgcctggccg gacggtgtgg ctggcggccc tgcctgggcg cggagggcgg cggtggcggg
301 ccccgcggcc ttctctcagc ttcctttctc ctcacgacgg cctccacagt ccggagcccg
361 gcggagcccg gacctggcgg ggagagctgc ctccacggcc gggcacccag accccaccgt
421 cgcagtcgcc accacctcag tccatccttg gtaccggcaa tgggcttcgt atcctccagt
481 gcacttgtaa ctgacttgga cacggaatac taagaactca cttctgtcct catcccagtc
541 gcgccggcgg tgaccatctc ggctcttttg ggcttaactg ccgctcctct ggactctgtc
601 tgactttggg ggcaccatgg accaaagtgg gatggagatt cctgtgaccc tcatcattaa
661 agcaccgaat cagaaataca gtgaccagac tattagctgc ttcttgaact ggaccgtggg
721 gaaactaaaa acgcatctat ctaacgttta ccctagcaaa ccattgacga aggatcagag
781 attggtgtat tcgggcagac tgcttcccga tcatctgcag ctgaaagaca ttctcagaaa
841 acaagatgag tatcatatgg ttcatctagt atgtacttct cggactcctc ccagttctcc
901 aaaatccagc accaatagag aaagtcatga agcattgaca tccagcagca attctagttc
961 agatcattca ggatcaacaa ctccatcatc tggtcaagaa accttgtctt tagctgtggg
1021 ttcttcctca gaaggattga ggcagcgtac ccttccacaa gcacaaactg accaagcaca
1081 gagtcaccag tttccatatg taatgcaagg aaatgtagac aaccaatttc ctgggcaagc
1141 tgctccacct ggattcccag tgtatcccgc gtttagccca ctgcagatgc tatggtggca
1201 acagatgtat gctcatcagt attatatgca gtatcaagct gcagtttcag ctcaggccac
1261 atcaaatgtc aacccaaccc agcctactac ttcacagcct ctaaatttgg cacatgttcc
1321 tggagaagaa cccccaccag ctccaaacct agtggcccaa gaaaatcgac ccatgaatga
1381 gaatgttcaa atgaatgcac agggaggtcc agtactaaat gaagaagact tcaatcgaga
1441 ctggctagac tggatgtaca cgttctcacg agctgcgatt ctccttagca ttgtatactt
1501 ctattcttct tttagtcggt ttatcatggt aatgggagcc atgctactgg tttatttaca
1561 ccaagctgga tggtttcctt ttaggcaaga aggaggtcat cagcaggctc ccaacaataa
1621 tgccgaagtt aacaatgatg ggcaaaatgc aaacaacttg gaacttgaag aaatggagcg
1681 tcttatggat gatgggcttg aagatgagag tggagaagat ggaggtgaag atgccagtgc
1741 aattcaaagg cctggattaa tggcttcagc ttggtctttc atcaccacct tctttacttc
1801 actaatacca gaggggcctc cccaggttgc caattgacct gaaaaactgt gccagctaca
1861 aggagggtct gacttcagga aagtggttta aataacagtg caatttcaaa aaaatttata
1921 actttctttt gatcatcatg tacagaggtg ttttttttct ttaggcttct catgcatatg
1981 aatattttaa gcacgaatgg actactaaat atctgagttt tttttttttt tttttaaaga
2041 tcctaacaga acatagcgta acaatattgg tcttccaggt gttactcatt tcaattatgt
2101 gtagtatacc aggacagacc tattttcatg tcttatttct ttaaagagct gcttcattgg
2161 ccgggcgcca tggctcacgt ctgtaatccc agcactttgg gaggccgagg cgggtgggtt
2221 acttgaggtc aggagttcga gaccagcctg gcaaacatgg cgaaacccca tcttaactaa
2281 aaatacaaaa aaattagccg ggtgtggtgt cacgcgcctg taatcccagc tacttggggg
2341 gctcaggcag gagaattgcc tgaacccagg aggcggaggt tgcagtgagc tgagattggg
2401 ccactgcact ccaccctggg cgacagagtg agactcggtc tcagaaaaaa aaaaaaaaga
2461 gctgcttcac atataaatgt ctatagctag tagcctggcc ctttaatgtt taatttgaat
2521 agatatatct gttttccgtg aattatcttg aaagttttaa acagaatgac ctcatagttt
2581 ttaataaaga atattattta cctaaaatgt gctagtagca tcttgcccag ccataaagca
2641 ataaacttct caataatctt aattttgata tttgaataaa taatggaaac tttctgtatt
2701 aagggcatgt atcccatcaa ttggaatcag taccttaaca gaaaaaggca gctcttcaat
2761 ggaattaacg tgatataaaa tgtttgatat aggcagtact tttataaaaa aagataagct
2821 ggaaattgct ccgtgtaatt ttttaaataa aaagtcaatt atggtaaaaa aaaaaaaaaa
2881 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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