LOCUS BC020218 2168 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens acyl-Coenzyme A dehydrogenase, very long chain, mRNA
(cDNA clone MGC:31908 IMAGE:5090104), complete cds.
ACCESSION BC020218
VERSION BC020218.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2168)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2168)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: p Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4557234.
FEATURES Location/Qualifiers
source 1..2168
/db_xref="H-InvDB:HIT000038759"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31908 IMAGE:5090104"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2168
/gene="ACADVL"
/gene_synonym="ACAD6"
/gene_synonym="LCACD"
/gene_synonym="VLCAD"
/db_xref="GeneID:37"
/db_xref="HGNC:HGNC:92"
/db_xref="MIM:609575"
CDS 63..1964
/gene="ACADVL"
/gene_synonym="ACAD6"
/gene_synonym="LCACD"
/gene_synonym="VLCAD"
/codon_start=1
/product="acyl-Coenzyme A dehydrogenase, very long chain"
/protein_id="AAH20218.1"
/db_xref="GeneID:37"
/db_xref="HGNC:HGNC:92"
/db_xref="MIM:609575"
/translation="MQAARMAASLGRQLLRLGGGSSRLTALLGQPRPGPARRPYAGGA
AQESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDA
LEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQ
SIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY
YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEK
KMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGII
AKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIE
AAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV
ALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELS
RSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRS
LSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSDPWQQELYRNFKSISKALVERGG
VVTSNPLGF"
BASE COUNT 497 a 557 c 677 g 437 t
ORIGIN
1 ggcgtgcagg acgccagagc tgggtcagag ctcgagccag cggcgcccgg agagattcgg
61 agatgcaggc ggctcggatg gccgcgagct tggggcggca gctgctgagg ctcgggggcg
121 gaagctcgcg gctcacggcg ctcctggggc agccccggcc cggccctgcc cggcggccct
181 atgccggggg tgccgctcag gaatctaagt cctttgctgt gggaatgttc aaaggccagc
241 tcaccacaga tcaggtgttc ccatacccgt ccgtgctcaa cgaagagcag acacagtttc
301 ttaaagagct ggtggagcct gtgtcccgtt tcttcgagga agtgaacgat cccgccaaga
361 atgacgctct ggagatggtg gaggagacca cttggcaggg cctcaaggag ctgggggcct
421 ttggtctgca agtgcccagt gagctgggtg gtgtgggcct ttgcaacacc cagtacgccc
481 gtttggtgga gatcgtgggc atgcatgacc ttggcgtggg cattaccctg ggggcccatc
541 agagcatcgg tttcaaaggc atcctgctct ttggcacaaa ggcccagaaa gaaaaatacc
601 tccccaagct ggcatctggg gagactgtgg ccgctttctg tctaaccgag ccctcaagcg
661 ggtcagatgc agcctccatc cgaacctctg ctgtgcccag cccctgtgga aaatactata
721 ccctcaatgg aagcaagctt tggatcagta atgggggcct agcagacatc ttcacggtct
781 ttgccaagac accagttaca gatccagcca caggagccgt gaaggagaag atcacagctt
841 ttgtggtgga gaggggcttc gggggcatta cccatgggcc ccctgagaag aagatgggca
901 tcaaggcttc aaacacagca gaggtgttct ttgatggagt acgggtgcca tcggagaacg
961 tgctgggtga ggttgggagt ggcttcaagg ttgccatgca catcctcaac aatggaaggt
1021 ttggcatggc tgcggccctg gcaggtacca tgagaggcat cattgctaag gcggtagatc
1081 atgccactaa tcgtacccag tttggggaga aaattcacaa ctttgggctg atccaggaga
1141 agctggcacg gatggttatg ctgcagtatg taactgagtc catggcttac atggtgagtg
1201 ctaacatgga ccagggagcc acggacttcc agatagaggc cgccatcagc aaaatctttg
1261 gctcggaggc agcctggaag gtgacagatg aatgcatcca aatcatgggg ggtatgggct
1321 tcatgaagga acctggagta gagcgtgtgc tccgagatct tcgcatcttc cggatctttg
1381 aggggacaaa tgacattctt cggctgtttg tggctctgca gggctgtatg gacaaaggaa
1441 aggagctctc tgggcttggc agtgctctaa agaatccctt tgggaatgct ggcctcctgc
1501 taggagaggc aggcaaacag ctgaggcggc gggcagggct gggcagcggc ctgagtctca
1561 gcggacttgt ccacccggag ttgagtcgga gtggcgagct ggcagtacgg gctctggagc
1621 agtttgccac tgtggtggag gccaagctga taaaacacaa gaaggggatt gtcaatgaac
1681 agtttctgct gcagcggctg gcagacgggg ccatcgacct ctatgccatg gtggtggttc
1741 tctcgagggc ctcaagatcc ctgagtgagg gccaccccac ggcccagcat gagaaaatgc
1801 tctgtgacac ctggtgtatc gaggctgcag ctcggatccg agagggcatg gccgccctgc
1861 agtctgaccc ctggcagcaa gagctctacc gcaacttcaa aagcatctcc aaggccttgg
1921 tggagcgggg tggtgtggtc accagcaacc cacttggctt ctgaatactc ccggccaggg
1981 cctgtcccag ttatgtgcct tccctcaagc caaagccgaa gcccctttcc ttaaggccct
2041 ggtttgtccc gaaggggcct agtgttccca gcactgtgcc tgctctcaag agcacttact
2101 gcctcgcaaa taataaaaat ttctagccag taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaa
//