LOCUS BC020126 3851 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 30, mRNA (cDNA
clone MGC:21290 IMAGE:4339419), complete cds.
ACCESSION BC020126
VERSION BC020126.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3851)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3851)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336289.
FEATURES Location/Qualifiers
source 1..3851
/db_xref="H-InvDB:HIT000038736"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21290 IMAGE:4339419"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3851
/gene="DHX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/db_xref="GeneID:22907"
/db_xref="HGNC:HGNC:16716"
CDS 175..3759
/gene="DHX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/codon_start=1
/product="DEAH (Asp-Glu-Ala-His) box polypeptide 30"
/protein_id="AAH20126.1"
/db_xref="GeneID:22907"
/db_xref="HGNC:HGNC:16716"
/translation="MFSLDSFRKDRAQHRQRQCKLPPPRLPPMCVNPTPGGTISRASR
DLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGY
GSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSPADSWWRPEPTM
PPTSWRQLNPESIRPGGPGGLSRSLGREEEEDEEEELEEGTIDVTDFLSMTQQDSHAP
LRDSRGSSFEMTDDDSAIRALTQFPLPKNLLAKVIQIATSSSTAKNLMQFHTVGTKTK
LSTLTLLWPCPMTFVAKGRRKAEAENKAAALACKKLKSLGLVDRNNEPLTHAMYNLAS
LRELGETQRRPCTIQVPEPILRKIETFLNHYPVESSWIAPELRLQSDDILPLGKDSGP
LSDPITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQH
PVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELG
PSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDV
NTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLE
DILAKLGKHQYLHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIK
GVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSITI
NDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRS
RLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQ
EIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLTRDPFSSS
LQNRAEVDKVKALLSHDSGSDHLAFVRAVAGWEEVLRWQDRSSRENYLEENLLYAPSL
RFIHGLIKQFSENIYEAFLVGKPSDCTLASAQCNEYSEEEELVKGVLMAGLYPNLIQV
RQGKVTRQGKFKPNSVTYRTKSGNILLHKSTINREATRLRSRWLTYFMAVKSNGSVFV
RDSSQVHPLAVLLLTDGDVHIRDDGRRATISLSDSDLLRLEGDSRTVRLLKELRRALG
RMVERSLRSELAALPPSVQEEHGQLLALLAELLRGPCGSFDVRKTADD"
BASE COUNT 862 a 1126 c 1127 g 736 t
ORIGIN
1 gccgcggctc atgcgcggtg cacagaggct tgtttcacat ctgtaacaac aggaggaggc
61 ccagcctcgt gatgaggaat agcaaggaga gaattcagct ccagttcaaa agcctacaaa
121 atctgagact gtcattgctt ttataaggat tccagctttc cctcctggcc agaaatgttc
181 agcctggact cattcagaaa agatcgggcc cagcacaggc agcgtcagtg caaacttccc
241 ccaccccgcc ttccacccat gtgtgtcaac cctaccccag gagggaccat ctctcgagct
301 tctagggacc tattaaaaga gttcccacag cccaaaaatc ttctcaacag tgtgattgga
361 agagccctcg gcatctcaca tgcaaaagac aaactagtct acgtgcacac aaatggaccg
421 aagaaaaaga aagtcacact gcacataaaa tggcccaaga gcgtggaggt agaaggctat
481 ggcagcaaga agatcgatgc tgagcggcag gctgcagctg cagcctgcca gctgttcaag
541 ggttggggtc tgctaggtcc ccggaatgag ttgtttgacg cagccaaata ccgagtgcta
601 gctgatcgct ttggctcccc tgccgacagc tggtggcgtc cggaacccac catgccccct
661 acttcctggc ggcagctgaa tccagagagt attcgaccag ggggacctgg gggcctatcc
721 cgctctttag gccgggaaga agaggaggac gaggaggaag agctagaaga agggaccata
781 gatgttaccg acttcttgtc catgacccag caggattccc acgctccact cagggactca
841 agggggagtt cctttgagat gacagatgac gacagtgcca ttagggctct gacccagttt
901 ccacttccca agaaccttct ggccaaggtg attcagattg caacgtcatc ctccacagct
961 aagaacctca tgcagttcca tactgtgggc accaagacca agctgtctac actcaccctg
1021 ctctggccct gccccatgac ctttgttgcc aaagggcgcc gcaaagcaga ggctgagaat
1081 aaggcggcag ccttggcctg caagaaactg aagagcctgg gcctggtgga caggaacaac
1141 gaaccgctta cacacgccat gtataacctg gcctctttgc gtgagctggg tgagacccag
1201 cgccgaccat gcaccatcca ggtgcccgag cccatcctcc gcaagataga gaccttcctg
1261 aaccattacc ctgtggagag ttcatggatc gccccagaac tccggctgca gagtgatgac
1321 atcttgccct tgggcaagga ctcagggcct ctgagtgacc ctatcacagg caagccctat
1381 gtgcccctgt tggaagcaga ggaggtacgt ctcagccaga gtctgctaga actgtggcgg
1441 cggcgagggc cggtctggca ggaggccccc cagctacctg tggacccaca tcgggacacc
1501 atcctcaacg ccattgagca gcacccggtg gtggtcatct ctggggacac gggctgtggg
1561 aagaccacgc gcatccccca gctgttgctg gagcgctatg tgaccgaggg ccgaggtgcc
1621 cgctgcaatg ttatcatcac ccaacctcgc cgcatctctg ctgtgtctgt ggcacagcgg
1681 gtcagccacg aactgggccc ctccctgcgc cggaatgtgg gcttccaggt gcggttggaa
1741 agtaagcccc catcccgagg cggggccctg ctcttctgca ctgtgggtat cctgctgcgt
1801 aagctgcaga gcaaccccag cctggagggc gtgagccacg tcatcgtgga tgaggtgcat
1861 gagcgggacg tgaacacaga ctttctgctg atcctgctca agggcctgca gcggctcaac
1921 ccggccctgc ggctggtgct catgagtgcc acaggggaca atgagcgctt ctcccgatac
1981 tttggtggct gccccgtcat caaggtgcct ggcttcatgt acccagtcaa ggagcactac
2041 ctagaggaca tcctggccaa gttgggcaag caccagtacc tgcaccggca ccggcaccat
2101 gagtctgagg atgaatgcgc actcgatttg gaccttgtga ctgatctggt tctgcacatc
2161 gatgctcgcg gggaaccagg tgggatcctg tgcttcctgc ctgggtggca ggagatcaaa
2221 ggagtgcagc agcgcctcca ggaggccctg ggcatgcacg agagcaagta cctcatcctg
2281 ccagtgcact ccaacatccc catgatggat cagaaggcca tattccagca gcctccagtt
2341 ggggtgcgca agattgtctt ggccaccaac attgctgaga cttccatcac aatcaatgac
2401 atcgtgcatg tggtggacag tgggctgcac aaggaagaac gctatgacct gaagaccaag
2461 gtgtcctgcc tggagacagt gtgggtatca agagccaatg tgatccagcg ccggggccgg
2521 gcgggccgct gccagtccgg ctttgcctac cacttgttcc ctcgaagccg gctggagaaa
2581 atggtccctt tccaagtgcc agagatcctg cgcacacctc ttgagaacct ggtgctgcaa
2641 gcgaaaatcc acatgcctga gaagacggcg gtggagttcc tgtccaaggc tgtggacagt
2701 ccaaacatca aggcagtgga cgaggctgtg atcttgctcc aggagatcgg ggtgctggac
2761 cagcgggagt acctgactac cctggggcag cgcctggctc acatctccac cgacccccgg
2821 ttggccaagg ccattgtgtt ggctgccatc ttccgttgcc tgcacccact actggtggtc
2881 gtttcctgcc tcacccggga ccccttcagc agcagcctac agaaccgggc agaggtggac
2941 aaggtgaaag cactgttgag ccatgacagc ggcagtgacc acctggcctt tgtgcgggct
3001 gtcgccggct gggaggaggt gctgcgttgg caggaccgca gctcccggga gaattacctg
3061 gaggaaaacc tgctgtacgc acccagcctg cgcttcatcc acggactcat caagcagttc
3121 tcagagaaca tttatgaggc cttcctggtg gggaagccct cggactgcac cctggcctcc
3181 gcccagtgca acgagtacag tgaggaggag gagctggtga agggcgtgct gatggccggc
3241 ctctacccca acctcatcca ggtgaggcag ggcaaggtca cccggcaggg gaagttcaag
3301 cccaacagcg tcacatatag gaccaaatca ggcaacatcc tgctgcacaa gtcgaccatt
3361 aacagggagg ccacacggtt acggagccga tggctgacgt atttcatggc agtcaagtcc
3421 aatggcagcg tcttcgtccg ggactcctct caggtgcacc cgctagctgt gctgctgctg
3481 accgacgggg acgtgcacat ccgtgatgac gggcgccggg ccaccatctc actgagcgac
3541 agtgacctgc tgcggctgga gggtgactcg cgtaccgtgc ggctgctgaa ggagctgcgg
3601 cgggccctgg gccgcatggt ggagcggagc ctgcgcagcg agctggctgc acttcccccc
3661 agcgtacagg aggagcacgg gcagctgctt gcgctactgg cagagctgct gcgaggaccc
3721 tgtggcagct ttgatgtgcg caagacagct gacgactgag ccctgcttct gctggggctg
3781 tgtacagagt gcaaatgttt atttaaaata aagttctatt tatcccttgt gaaaaaaaaa
3841 aaaaaaaaaa a
//