LOCUS BC020082 2650 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens suppressor of cytokine signaling 6, mRNA (cDNA clone
MGC:9529 IMAGE:3917519), complete cds.
ACCESSION BC020082
VERSION BC020082.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2650)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2650)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: a Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21450784.
FEATURES Location/Qualifiers
source 1..2650
/db_xref="H-InvDB:HIT000038731"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9529 IMAGE:3917519"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2650
/gene="SOCS6"
/gene_synonym="CIS4"
/gene_synonym="HSPC060"
/gene_synonym="SSI4"
/gene_synonym="STAI4"
/gene_synonym="STATI4"
/db_xref="GeneID:9306"
/db_xref="HGNC:HGNC:16833"
/db_xref="MIM:605118"
CDS 191..1798
/gene="SOCS6"
/gene_synonym="CIS4"
/gene_synonym="HSPC060"
/gene_synonym="SSI4"
/gene_synonym="STAI4"
/gene_synonym="STATI4"
/codon_start=1
/product="suppressor of cytokine signaling 6"
/protein_id="AAH20082.1"
/db_xref="GeneID:9306"
/db_xref="HGNC:HGNC:16833"
/db_xref="MIM:605118"
/translation="MKKISLKTLRKSFNLNKSKEETDFMVVQQPSLASDFGKDDSLFG
SCYGKDMASCDINGEDEKGGKNRSKSESLMGTLKRRLSAKQKSKGKAGTPSGSSADED
TFSSSSAPIVFKDVRAQRPIRSTSLRSHHYSPAPWPLRPTNSEETCIKMEVRVKALVH
SSSPSPALNGVRKDFHDLQSETTCQEQANSLKSSASHNGDLHLHLDEHVPVVIGLMPQ
DYIQYTVPLDEGMYPLEGSRSYCLDSSSPMEVSAVPPQVGGRAFPEDESQVDQDLVVA
PEIFVDQSVNGLLIGTTGVMLQSPRAGHDDVPPLSPLLPPMQNNQIQRNFSGLTGTEA
HVAESMRCHLNFDPNSAPGVARVYDSVQSSGPMVVTSLTEELKKLAKQGWYWGPITRW
EAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDVEG
HTSIVDLIEHSIRDSENGAFCYSRSRLPGSATYPVRLTNPVSRFMQVRSLQYLCRFVI
RQYTRIDLIQKLPLPNKMKDYLQEKHY"
BASE COUNT 773 a 549 c 605 g 723 t
ORIGIN
1 ggagaaggcg agcgcggcag tcgcgccggc gctgggcgag gaagcggagc cgggccgcct
61 ccggaaaatg gctccaaagg ttaaatgaag caggaaaaat acatagatgc agccttgcag
121 cctctccaga tgtttgggga taatattcca gatagaaata ttgatccctt ggattaggta
181 actagtcata atgaagaaaa ttagtcttaa aaccttacgg aaatctttta acttgaataa
241 aagtaaagaa gaaactgatt tcatggtagt acaacaacca tcgctagcca gtgactttgg
301 aaaagatgat tccttatttg gtagctgcta tggtaaagat atggccagct gcgatatcaa
361 cggtgaagat gaaaaaggcg gaaaaaacag atcaaaaagc gagagcctga tgggtacgct
421 aaaaaggcgg ctttctgcaa aacagaagtc aaaaggcaag gcgggcacac cctctgggag
481 ctctgccgac gaggacacct tctcctcctc ctcagcaccc atagtcttta aagacgtgag
541 agctcagagg ccgataaggt ccacgtcgct ccgcagccat cactacagtc ccgcgccgtg
601 gcctctgcgg cccacaaact ccgaggagac ctgcatcaag atggaggtga gagtcaaggc
661 cttggttcac tcttccagcc cgagtccagc cctgaatggc gtccggaagg atttccacga
721 cctccagtct gagaccacgt gccaggagca agccaattca ctgaagagct cggcttctca
781 taatggagac ctgcatcttc acctggatga acatgtgcct gtcgttattg gacttatgcc
841 tcaggactac attcagtata ctgtgccttt agatgagggg atgtatcctt tggaaggatc
901 acggagctat tgtctggaca gctcttctcc catggaagtc tctgcggttc ctcctcaagt
961 gggagggcgc gctttccccg aggatgagag tcaggtagac caggacctag ttgtcgcccc
1021 agagatcttc gtggatcagt ccgtgaatgg cttgttgatt ggcaccacgg gagtcatgtt
1081 gcagagcccg agagcgggtc acgatgatgt ccctccactc tcaccattgc tacctccaat
1141 gcagaataat caaatccaaa ggaacttcag tggactcact ggcacagaag cccacgtggc
1201 tgaaagtatg cgctgtcatt tgaattttga tccgaactct gctcctgggg ttgcaagagt
1261 ttatgactca gtgcaaagta gtggtcccat ggttgtgaca agccttacag aggagctgaa
1321 aaaacttgca aagcaaggat ggtactgggg accaatcaca cgttgggagg cagaagggaa
1381 gctagcaaac gtgccagatg gttcttttct tgttcgggac agttctgacg accgttacct
1441 tttaagcttg agctttcgct cccatggtaa aacacttcac actagaattg agcactcaaa
1501 tggtaggttt agcttttatg aacagccaga tgtggaagga catacgtcca tagttgatct
1561 aattgagcat tcaatcaggg actctgaaaa tggagctttt tgttattcaa ggtctcggct
1621 gcctggatct gcaacttacc ccgtcagact gaccaaccca gtgtcccggt tcatgcaggt
1681 gcgctcgttg cagtacctgt gtcgttttgt tatacgtcag tataccagaa tagacttaat
1741 tcagaaactg cctttgccaa acaaaatgaa ggattattta caggagaagc actactgaaa
1801 gattgagaac cctgcatctt gcactttggg aataagaaca agagattgaa atacagttta
1861 caaactttca ttgccatcaa aatcttttgc tgccataact atttcagttt tatgtgtaaa
1921 agagtcatca gtttgtttag gggtggggaa gtgtcagcaa ggtgtcttgg gtttattttg
1981 gttctttaaa aaagggaagt cttgaggttt tagaggtgtg aattatgttt catcaatgtg
2041 cagaataatc acaatgtgaa ttatcaaatt ctcctcaatg ccccccccgc ccagtccttt
2101 gctgctatcc actgtgattt ttatgcatta aaagcacatt tcatgtgtat tcaaccctaa
2161 gtaaagttga atgaaactta acagaatgga aattgctatg tctttttaaa tggtccattt
2221 tcaaaagaca gtgttgaata aacatacctg tgtgataaaa cacagaattt acatatacac
2281 tgaagatgag tttttaatct cttactttaa aaagatttat ttagaatcgt gaattgacat
2341 aatcttgggt aatggaacgg agatctgcaa catatctttt aacaacactt ttttctaaat
2401 tatttctaag gttgtgctaa ttcttttggt tgtgaaaagt tgaatttttc tgttgccttc
2461 gttttcatct tctagtttgt ctattttaat aaatggcctt acattaaaaa attgtaaaga
2521 aatgtatacc accaatttag aaattgttgc cttttctgta attaaactcg ggtacaaatt
2581 ggcataacat gaaaacctat ggaactagaa ttattattaa agaaatatta gatgaaaaaa
2641 aaaaaaaaaa
//