LOCUS BC020066 3613 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens programmed cell death 6 interacting protein, mRNA
(cDNA clone MGC:17003 IMAGE:4340998), complete cds.
ACCESSION BC020066
VERSION BC020066.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3613)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3613)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255927.
FEATURES Location/Qualifiers
source 1..3613
/db_xref="H-InvDB:HIT000038729"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17003 IMAGE:4340998"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3613
/gene="PDCD6IP"
/gene_synonym="AIP1"
/gene_synonym="Alix"
/gene_synonym="DRIP4"
/gene_synonym="HP95"
/gene_synonym="MGC17003"
/db_xref="GeneID:10015"
/db_xref="HGNC:HGNC:8766"
/db_xref="MIM:608074"
CDS 109..2715
/gene="PDCD6IP"
/gene_synonym="AIP1"
/gene_synonym="Alix"
/gene_synonym="DRIP4"
/gene_synonym="HP95"
/gene_synonym="MGC17003"
/codon_start=1
/product="programmed cell death 6 interacting protein"
/protein_id="AAH20066.1"
/db_xref="GeneID:10015"
/db_xref="HGNC:HGNC:8766"
/db_xref="MIM:608074"
/translation="MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAE
ELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKG
SLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF
LHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLAN
QAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIAR
LQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGK
ATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLA
NGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI
LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQ
VKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKER
EGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEG
LLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE
ILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPP
TPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQA
QGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPF
PQPPQQSYYPQQ"
BASE COUNT 1101 a 762 c 760 g 990 t
ORIGIN
1 ctgtcagcca gtcagtccgc cagtccgcca gcccagtacc tctctctcct cggccctcgt
61 aagctgtccg cggtctgttt ggcccgaacg gcggcggagg cgctgatcat ggcgacattc
121 atctcggtgc agctgaaaaa gacctcagag gtggacctgg ccaagccgct ggtgaagttc
181 atccagcaga cttacccaag cggcggggaa gagcaggccc agtactgccg cgcggcggag
241 gagctcagca agctgcgccg cgccgcagtc ggtcgtccgc tggacaagca cgagggcgcg
301 ctcgagacgc tcctgagata ttatgatcag atttgttcta ttgaacccaa attcccattt
361 tctgaaaatc agatctgctt gacatttacc tggaaggatg ctttcgataa aggttcactt
421 tttggaggct ctgtaaaact ggctcttgca agcttaggat atgaaaagag ctgtgtgttg
481 ttcaattgtg cagccttagc tagccaaatt gcagcagaac agaacctgga taatgatgaa
541 ggattgaaaa tcgctgctaa acattaccag tttgctagtg gtgccttttt acatattaaa
601 gagacggttt tatctgcctt aagtcgagag ccgaccgtgg acatatctcc agatactgtt
661 gggaccctca gtcttattat gctggcacag gctcaagaag tatttttttt aaaagccaca
721 agagataaaa tgaaagatgc catcatagct aaattggcta atcaggctgc agattatttt
781 ggtgatgctt tcaaacagtg tcaatacaaa gatactctcc ccaaggaggt gttccctgtc
841 ttggctgcaa agcactgtat catgcaggcc aatgctgagt accatcagtc tatcctggca
901 aaacagcaga agaaatttgg agaagaaatt gcaaggttac agcatgcagc agaactgatt
961 aaaacagtgg catctcgcta tgatgaatat gttaatgtga aggatttttc tgacaaaatc
1021 aatcgtgccc ttgctgcagc aaagaaggat aatgacttca tttatcatga tcgagttcca
1081 gaccttaaag atctagatcc tattggcaaa gccacacttg tgaaatctac cccggtcaat
1141 gtacccatca gtcagaaatt tactgatctg tttgagaaga tggttcccgt gtcagtacag
1201 cagtctttgg ctgcctataa tcagaggaaa gccgatttgg ttaacagatc aattgctcag
1261 atgagagaag ccaccacttt ggcaaatggg gtgctagctt cccttaatct tccagcagca
1321 attgaagatg tgtctggaga cactgtacct cagtctatat tgactaaatc cagatctgtg
1381 attgaacagg gaggcatcca gactgttgat cagttgatta aagaactgcc tgaattactg
1441 caacgaaata gagaaatcct agatgagtca ttaaggttgt tggatgaaga agaagcaacc
1501 gataatgatt taagagcaaa atttaaggaa cgttggcaaa ggacaccatc caatgaactg
1561 tataagcctt taagagcaga gggaaccaac ttcagaacag ttttagataa agctgtgcag
1621 gcagatggac aagtgaaaga atgttaccag tctcatcgtg acaccatcgt gcttttgtgt
1681 aagccagagc ctgagctgaa tgctgccatc ccttctgcta atccagcaaa gaccatgcag
1741 ggcagtgagg ttgtaaatgt cttaaaatcc ttattgtcaa atcttgatga agtaaagaag
1801 gaaagagagg gtctggagaa tgacttgaaa tctgtgaatt ttgacatgac aagcaagttt
1861 ttgacagccc tggctcaaga tggtgtgata aatgaagaag ctctttctgt tactgaacta
1921 gatcgagtct atggaggtct tacaactaaa gtccaagaat ctctaaagaa acaggaggga
1981 cttcttaaaa atattcaggt ctcacatcag gaattttcaa aaatgaaaca atctaataat
2041 gaagctaact taagagaaga agttttgaag aatttagcta ctgcatatga caactttgtt
2101 gaacttgtag ctaatttgaa ggaaggcaca aagttttaca atgagttgac tgaaatcctg
2161 gtcaggttcc agaacaaatg cagtgatata gtttttgcac ggaagacaga aagagatgaa
2221 ctcttaaagg acttgcaaca aagcattgcc agagaaccta gtgctccttc aattcctaca
2281 cctgcgtatc agtcctcacc agcaggagga catgcaccaa ctcctccaac tccagcgcca
2341 agaaccatgc cgcctactaa gccccagccc ccagccaggc ctccaccacc tgtgcttcca
2401 gcaaatcgag ctccttctgc tactgctcca tctccagtgg gggctgggac tgctgcgcca
2461 gctccatcac aaacgcctgg ctcagctcct cctccacagg cgcagggacc accctatccc
2521 acctatccag gatatcctgg gtattgccaa atgcccatgc ccatgggcta taatccttat
2581 gcgtatggcc agtataatat gccatatcca ccagtgtatc accagagtcc tggacaggct
2641 ccatacccgg gaccccagca gccttcatac cccttccctc agcccccaca gcagtcttac
2701 tatccacagc agtaatatgt ctgctcagca gctcagctga ttcagatcag agggaaagaa
2761 ataccaaccc tgcaataagt gtactaaact ctacgctctg gttaatgtaa tgtactctcc
2821 tggactgaat gcagtgtata atttctgtct acagctagaa gctgtgcccc agttccacat
2881 ttgattacac atgtgagatt tgctgctgtt gcagtataaa cactaggtat aataggattt
2941 gaaattgcat tacagttcat aaaaattgaa aatgagaaat taaacctgca agtgaaacat
3001 ttgaaacgat tatactttct acataagaca tggttgggac atcagatact tacaaagatg
3061 gtttaagtat ggatactaga gaaaattaag ttttctttct ctttggttta ttgatttggt
3121 ttaatttcca ttatgctatt ttgcataatc aaggcactgt aaatcttata attttaaaat
3181 aaattactta agaacagttg tcattgttat gttttgttat tgattctcat tactgtctaa
3241 ttttttttct ggtattagtc tcattttgta tgtatataag ttaaacagat actgttttta
3301 agtgcatgaa tagtacaagt tattatcaag gatgttttac agggaaatca aaagaatatt
3361 atcatacttt atctttcgta tgctgattag taaacgattt ttgacattta ttttagaaag
3421 tcctataatg tggaagaaac aaacagttgc taccaaagat gatgaaaata aacatacaaa
3481 taaatgtgta tatttaatgt tttattgtta gcttctccag aaaattgatg caaattctgg
3541 taataattct tgcatttttt ccccataacc tggttaaaat aaatacgcca ttggcaataa
3601 aaaaaaaaaa aaa
//