LOCUS BC019883 1869 bp mRNA linear HUM 13-OCT-2005
DEFINITION Homo sapiens C-type lectin domain family 2, member D, mRNA (cDNA
clone MGC:30031 IMAGE:4524891), complete cds.
ACCESSION BC019883
VERSION BC019883.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1869)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1869)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52426785.
FEATURES Location/Qualifiers
source 1..1869
/db_xref="H-InvDB:HIT000038703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:30031 IMAGE:4524891"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1869
/gene="CLEC2D"
/gene_synonym="CLAX"
/gene_synonym="LLT1"
/gene_synonym="OCIL"
/db_xref="GeneID:29121"
/db_xref="HGNC:HGNC:14351"
/db_xref="IMGT/GENE-DB:14351"
/db_xref="MIM:605659"
CDS 8..472
/gene="CLEC2D"
/gene_synonym="CLAX"
/gene_synonym="LLT1"
/gene_synonym="OCIL"
/codon_start=1
/product="CLEC2D protein"
/protein_id="AAH19883.1"
/db_xref="GeneID:29121"
/db_xref="HGNC:HGNC:14351"
/db_xref="IMGT/GENE-DB:14351"
/db_xref="MIM:605659"
/translation="MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMF
LTIIVCGMVAALSAIRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRF
CDSQDADLAQVESFQELNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ"
BASE COUNT 605 a 315 c 355 g 594 t
ORIGIN
1 aggcaaaatg catgacagta acaatgtgga gaaagacatt acaccatctg aattgcctgc
61 aaacccaggt tgtgtgcatt caaaagagca ttctattaaa gctaccttaa tttggcgctt
121 atttttctta atcatgtttc tgacaatcat agtgtgtgga atggttgctg ctttaagtgc
181 aataagagct aactgccatc aagagccatc agtatgtctt caagctgcat gcccagaaag
241 ctggattggt tttcaaagaa agtgtttcta tttttctgat gacaccaaga actggacatc
301 aagtcagagg ttttgtgact cacaagatgc tgatcttgct caggttgaaa gcttccagga
361 actgaatttc ctgttgagat ataaaggccc atctgatcac tggattgggc tgagcagaga
421 acaaggccaa ccatggaaat ggataaatgg tactgaatgg acaagacagt aagttctaaa
481 aatctggcag taatatttgt atttgaattt actttgcatt aaatctgaag tgttctctag
541 ttacatgctt taaaaaattc tcattttaag gttagtcatg aaagaagatg gtgccaactt
601 gtatgttgca aaggtttcac aagttcctcg aatgaatcca agacctgtca tggtgaggta
661 gactgactgt gaacttggct ccaggcttat ctatgtcatt ttcaaacact ttcattttaa
721 gcaaaccata caatatcttt aagtctgttc cttacctcca caacaaaatt aaattgcact
781 tgtcctcctg atttcacagg gttgatgtga ggaacagagg ttttgatgta tcagggaaag
841 attatgagtg acagcaatta tacctattat ttaaaataag acaatagttt taaaatttta
901 aaatgggtaa agtttggcac tagaaaattt aatctcaatt gtatatttat aggatcttca
961 gattactaaa aagatttgag ataatgctgg aaaaattgga ttcacacaat ttcactcaat
1021 gtttgtctga gagatgagac agttttgaaa agctacttta ttgtaataca ttcatcaata
1081 ttggaaatat aactttattt aataaaaaga gccccagact ggacattggc aggtttgaaa
1141 tgagtttttt ctcattagct tttgaccttg gatgggatgg taagttttag aaatcagaga
1201 acatgtacat ttatacattg ttgtatctac actgccttgc acattgtgac tgcttcataa
1261 atatctagaa ttaactttta tttcttattt tacaatacgg aagtagtaaa ttttctctac
1321 ctaattctta aaatggtttt ttgtttgttt gtatttttga gagacagggt cttactctgt
1381 tacccaggct ggagtgcagt agtaccatcg tggctcactg cagccttgac ttccctggct
1441 caagtgagcc tcccatctca ggctcctgag tagctgggac tacaggtttc ctatcctggg
1501 agcaggagag tgtgcctatt tgaatgacaa aggtgccagt agtgccaggc actacacaga
1561 gaggaagtgg atttgttcca aatcagatat acatgtctag atgttacagc aaagccccaa
1621 ctaatcttta gaagcatatt ggaactgata actccatttt aaaatgagca aagaatttat
1681 ttcttatacc aacaggtata tgaaaatatg ctcaatatca ctaataactg ggaaaataca
1741 aatcaaaatc atagtaaaat attacctgtt ttcatggtgc taatattacc tgttctccca
1801 ctgctaatga catacccgag actgagtaat ttataaataa aagagattta attgaaaaaa
1861 aaaaaaaaa
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