LOCUS BC019580 2542 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens heterogeneous nuclear ribonucleoprotein M, mRNA (cDNA
clone MGC:24927 IMAGE:4938259), complete cds.
ACCESSION BC019580
VERSION BC019580.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2542)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2542)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: o Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14141151.
FEATURES Location/Qualifiers
source 1..2542
/db_xref="H-InvDB:HIT000038663"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24927 IMAGE:4938259"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2542
/gene="HNRPM"
/gene_synonym="HNRNPM"
/gene_synonym="HNRNPM4"
/gene_synonym="HNRPM4"
/gene_synonym="HTGR1"
/db_xref="GeneID:4670"
/db_xref="HGNC:HGNC:5046"
/db_xref="MIM:160994"
CDS 10..2202
/gene="HNRPM"
/gene_synonym="HNRNPM"
/gene_synonym="HNRNPM4"
/gene_synonym="HNRPM4"
/gene_synonym="HTGR1"
/codon_start=1
/product="heterogeneous nuclear ribonucleoprotein M"
/protein_id="AAH19580.1"
/db_xref="GeneID:4670"
/db_xref="HGNC:HGNC:5046"
/db_xref="MIM:160994"
/translation="MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPA
QNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVE
LLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKV
MATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWK
KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV
KMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGM
GMEGIGFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGG
GGGGSVPGIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERM
GSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTI
ERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERM
GLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIE
MERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYA
DIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA"
BASE COUNT 707 a 507 c 800 g 528 t
ORIGIN
1 gcggagaaaa tggcggcagg ggtcgaagcg gcggcggagg tggcggcgac ggagatcaaa
61 atggaggaag agagcggcgc gcccggcgtg ccgagcggca acggggctcc gggccctaag
121 ggtgaaggag aacgacctgc tcagaatgag aagaggaagg agaaaaacat aaaaagagga
181 ggcaatcgct ttgagccata tgccaatcca actaaaagat acagagcctt cattacaaac
241 ataccttttg atgtgaaatg gcagtcactt aaagacctgg ttaaagaaaa agttggtgag
301 gtaacatacg tggagctctt aatggacgct gaaggaaagt caaggggatg tgctgttgtt
361 gaattcaaga tggaagagag catgaaaaaa gctgcggaag tcctaaacaa gcatagtctg
421 agcggaagac cactgaaagt caaagaagat cctgatggtg aacatgccag gagagcaatg
481 caaaaggtga tggctacgac tggtgggatg ggtatgggac caggtggccc aggaatgatt
541 actatcccac ccagtatcct aaataatccc aacatcccaa atgagattat ccatgcatta
601 caggctggaa gacttggaag cacagtattt gtagcaaatc tggattataa agttggctgg
661 aagaaactga aggaagtatt tagtatggct ggtgtggtgg tccgagcaga cattcttgaa
721 gataaagatg gaaaaagtcg tggaataggc actgttactt ttgaacagtc cattgaagct
781 gtgcaagcta tatctatgtt caatggccag ctgctatttg atagaccaat gcacgtcaag
841 atggatgaga gggccttacc aaaaggagat ttcttccctc ctgagcgtcc acaacaactt
901 ccccatggcc ttggtggtat tggcatgggg ttaggaccag gagggcaacc cattgatgcc
961 aatcacctga ataaaggcat cggaatggga aacataggtc ccgcaggaat gggaatggaa
1021 ggcataggat ttggaataaa taaaatggga ggaatggagg ggccctttgg tggtggtatg
1081 gaaaacatgg gtcgatttgg atctgggatg aacatgggca ggataaatga aatcctaagt
1141 aatgcactga agagaggaga gatcattgca aagcagggag gaggtggagg tggaggaagc
1201 gtccctggga tcgagaggat gggtcctggc attgaccgcc tcgggggtgc cggcatggag
1261 cgcatgggcg cgggcctggg ccacggcatg gatcgcgtgg gctccgagat cgagcgcatg
1321 ggcctggtca tggaccgcat gggctccgtg gagcgcatgg gctccggcat tgagcgcatg
1381 ggcccgctgg gcctcgacca catggcctcc agcattgagc gcatgggcca gaccatggag
1441 cgcattggct ctggcgtgga gcgcatgggt gccggcatgg gcttcggcct tgagcgcatg
1501 gccgctccca tcgaccgtgt gggccagacc attgagcgca tgggctctgg cgtggagcgc
1561 atgggccctg ccatcgagcg catgggcctg agcatggagc gcatggtgcc cgcaggtatg
1621 ggagctggcc tggagcgcat gggccccgtg atggatcgca tggccaccgg cctggagcgc
1681 atgggcgcca acaatctgga gcggatgggc ctggagcgca tgggcgccaa cagcctcgag
1741 cgcatgggcc tggagcgcat gggtgccaac agcctcgagc gcatgggccc cgccatgggc
1801 ccggccctgg gcgctggcat tgagcgcatg ggcctggcca tgggtggcgg tggcggtgcc
1861 agctttgacc gtgccatcga gatggagcgt ggcaacttcg gaggaagctt cgcaggttcc
1921 tttggtggag ctggaggcca tgctcctggg gtggccagga aggcctgcca gatatttgtg
1981 agaaatctgc cattcgattt cacatggaag atgctaaagg acaaattcaa cgagtgcggc
2041 cacgtgctgt acgccgacat caagatggag aatgggaagt ccaaggggtg tggtgtggtt
2101 aagttcgagt cgccagaggt ggccgagaga gcctgccgga tgatgaatgg catgaagctg
2161 agtggccgag agattgacgt tcgaattgat agaaacgctt aagcagttgc cttttttaaa
2221 catcgatacg agacctctga atttgtattt tttcttgtta accattttaa tttgttggct
2281 ggatgtataa agatgtttaa aaaattcagt tgctttttgg ggtaatttga attacttttt
2341 taatgactgg ggttccattt gactgtttgc attgagattg caatgtgcgc aatttttttt
2401 gtagttgtgg catcttgttg acatcgaata tgactttgat aataaatacc ggttcctgaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2521 aaaaaaaaaa aaaaaaaaaa aa
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