LOCUS BC019290 1401 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens claudin 5, mRNA (cDNA clone MGC:4051 IMAGE:2822745),
complete cds.
ACCESSION BC019290
VERSION BC019290.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1401)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1401)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38570041.
FEATURES Location/Qualifiers
source 1..1401
/db_xref="H-InvDB:HIT000089898"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4051 IMAGE:2822745"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1401
/gene="CLDN5"
/gene_synonym="BEC1"
/gene_synonym="CPETRL1"
/db_xref="GeneID:7122"
/db_xref="HGNC:HGNC:2047"
/db_xref="MIM:602101"
CDS 145..801
/gene="CLDN5"
/gene_synonym="BEC1"
/gene_synonym="CPETRL1"
/codon_start=1
/product="claudin 5"
/protein_id="AAH19290.2"
/db_xref="GeneID:7122"
/db_xref="HGNC:HGNC:2047"
/db_xref="MIM:602101"
/translation="MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQ
TTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGA
QCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYEL
GAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV
"
BASE COUNT 220 a 450 c 481 g 250 t
ORIGIN
1 gaggtgcgac agacccgcgg ggcaaacgga ctggggccaa gagccgggag cgcgggcgca
61 aaggcaccag ggcccgccca gggcgccgcg cagcacggcc ttgggggttc tgcgggcctt
121 cgggtgcgcg tctcgcctct agccatgggg tccgcagcgt tggagatcct gggcctggtg
181 ctgtgcctgg tgggctgggg gggtctgatc ctggcgtgcg ggctgcccat gtggcaggtg
241 accgccttcc tggaccacaa catcgtgacg gcgcagacca cctggaaggg gctgtggatg
301 tcgtgcgtgg tgcagagcac cgggcacatg cagtgcaaag tgtacgactc ggtgctggct
361 ctgagcaccg aggtgcaggc ggcgcgggcg ctcaccgtga gcgccgtgct gctggcgttc
421 gttgcgctct tcgtgaccct ggcgggcgcg cagtgcacca cctgcgtggc cccgggcccg
481 gccaaggcgc gtgtggccct cacgggaggc gtgctctacc tgttttgcgg gctgctggcg
541 ctcgtgccac tctgctggtt cgccaacatt gtcgtccgcg agttttacga cccgtctgtg
601 cccgtgtcgc agaagtacga gctgggcgca gcgctgtaca tcggctgggc ggccaccgcg
661 ctgctcatgg taggcggctg cctcttgtgc tgcggcgcct gggtctgcac cggccgtccc
721 gacctcagct tccccgtgaa gtactcagcg ccgcggcggc ccacggccac cggcgactac
781 gacaagaaga actacgtctg agggcgctgg gcacggccgg gcccctcctg ccagccacgc
841 ctgcgaggcg ttggataagc ctggggatcc ccgcatggac cgcggcttcc gccgggtagc
901 gcggcgcgca ggctcctcgg aacgtccggc tctgcgcccc gacgcggctc ctggatccgc
961 tcctgcctgc gcccgcagct gaccttctcc tgccactagc ccggccctgc ccttaacaga
1021 cggaatgaag tttccttttc tgtgcgcggc gctgtttcca taggcagagc gggtgtcaga
1081 ctgaggattt cgcttcccct ccaagacgct gggggtcttg gctgctgcct tacttcccag
1141 aggctcctgc tgacttcgga ggggcggatg cagagcccag ggcccccacc ggaagatgtg
1201 tacacctggt ctttactcca tcggcagggc ccgagcccag ggaccagtga cttggcctgg
1261 acctcccggt ctcactccag catctcccca ggcaaggctt gtgggcaccg gagcttgaga
1321 gagggcggga gtgggaaggc taagaatctg cttagtaaat ggtttgaact ctcaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa a
//