LOCUS BC019111 2038 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sequestosome 1, mRNA (cDNA clone MGC:29719
IMAGE:5091391), complete cds.
ACCESSION BC019111
VERSION BC019111.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2038)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2038)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2038
/db_xref="H-InvDB:HIT000038560"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29719 IMAGE:5091391"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2038
/gene="SQSTM1"
/gene_synonym="p60"
/gene_synonym="p62"
/gene_synonym="ZIP3"
/db_xref="GeneID:8878"
/db_xref="HGNC:HGNC:11280"
/db_xref="MIM:601530"
CDS 33..1355
/gene="SQSTM1"
/gene_synonym="p60"
/gene_synonym="p62"
/gene_synonym="ZIP3"
/codon_start=1
/product="sequestosome 1"
/protein_id="AAH19111.1"
/db_xref="GeneID:8878"
/db_xref="HGNC:HGNC:11280"
/db_xref="MIM:601530"
/translation="MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPC
ERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEK
KECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLH
RGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARP
GPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESS
STEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGG
DDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADP
RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL"
BASE COUNT 441 a 572 c 590 g 435 t
ORIGIN
1 aattcggcac gagggccagc tcgccgctcg ctatggcgtc gctcaccgtg aaggcctacc
61 ttctgggcaa ggaggacgcg gcgcgcgaga ttcgccgctt cagcttctgc tgcagccccg
121 agcctgaggc ggaagccgag gctgcggcgg gtccgggacc ctgcgagcgg ctgctgagcc
181 gggtggccgc cctgttcccc gcgctgcggc ctggcggctt ccaggcgcac taccgcgatg
241 aggacgggga cttggttgcc ttttccagtg acgaggaatt gacaatggcc atgtcctacg
301 tgaaggatga catcttccga atctacatta aagagaaaaa agagtgccgg cgggaccacc
361 gcccaccgtg tgctcaggag gcgccccgca acatggtgca ccccaatgtg atctgcgatg
421 gctgcaatgg gcctgtggta ggaacccgct acaagtgcag cgtctgccca gactacgact
481 tgtgtagcgt ctgcgaggga aagggcttgc accgggggca caccaagctc gcattcccca
541 gccccttcgg gcacctgtct gagggcttct cgcacagccg ctggctccgg aaggtgaaac
601 acggacactt cgggtggcca ggatgggaaa tgggtccacc aggaaactgg agcccacgtc
661 ctcctcgtgc aggggaggcc cgccctggcc ccacggcaga atcagcttct ggtccatcgg
721 aggatccgag tgtgaatttc ctgaagaacg ttggggagag tgtggcagct gcccttagcc
781 ctctgggcat tgaagttgat atcgatgtgg agcacggagg gaaaagaagc cgcctgaccc
841 ccgtctctcc agagagttcc agcacagagg agaagagcag ctcacagcca agcagctgct
901 gctctgatcc cagcaagccg ggtgggaatg ttgagggcgc cacgcagtct ctggcggagc
961 agatgagaaa gatcgccttg gagtccgagg ggcgccctga ggaacagatg gagtcggata
1021 actgttcagg aggagatgat gactggaccc atctgtcttc aaaagaagtg gacccgtcta
1081 caggtgaact ccagtcccta cagatgccag aatccgaagg gccaagctct ctggacccct
1141 cccaggaggg acccacaggg ctgaaggaag ctgccttgta cccacatctc ccgccagagg
1201 ctgacccgcg gctgattgag tccctctccc agatgctgtc catgggcttc tctgatgaag
1261 gcggctggct caccaggctc ctgcagacca agaactatga catcggagcg gctctggaca
1321 ccatccagta ttcaaagcat cccccgccgt tgtgaccact tttgcccacc tcttctgcgt
1381 gcccctcttc tgtctcatag ttgtgttaag cttgcgtaga attgcaggtc tctgtacggg
1441 ccagtttctc tgccttcttc caggatcagg ggttagggtg caagaagcca tttagggcag
1501 caaaacaagt gacatgaagg gagggtccct gtgtgtgtgt gtgctgatgt ttcctgggtg
1561 ccctggctcc ttgcagcagg gctgggcctg cgagacccaa ggctcactgc agcgcgctcc
1621 tgaccccttc ctgcaggggc tacgttagca gcccagcaca tagcttgcct aatggctttc
1681 actttctctt ttgttttaaa tgactcatag gtccctgaca tttagttgat tattttctgc
1741 tacagacctg gtacactctg attttagata aagtaagcct aggtgttgtc agcaggcagg
1801 ctggggaggc cagtgttgtg ggcttcctgc tgggactgag aaggctcacg aagggcatcc
1861 gcaatgttgg tttcactgag agctgcctcc tggtctcttc accactgtag ttctctcatt
1921 tccaaaccat cagctgcttt taaaataaga tctctttgta gccatcctgt taaatttgta
1981 aacaatctaa ttaaatggca tcagcacttt aaccaaaaaa aaaaaaaaaa aaaaaaaa
//