LOCUS BC018205 1752 bp mRNA linear HUM 27-JAN-2006
DEFINITION Homo sapiens hexosaminidase (glycosyl hydrolase family 20,
catalytic domain) containing, mRNA (cDNA clone MGC:9663
IMAGE:3464710), complete cds.
ACCESSION BC018205
VERSION BC018205.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1752)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1752)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: b Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734733.
FEATURES Location/Qualifiers
source 1..1752
/db_xref="H-InvDB:HIT000050702"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9663 IMAGE:3464710"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1752
/gene="HEXDC"
/gene_synonym="FLJ23825"
/db_xref="GeneID:284004"
/db_xref="HGNC:HGNC:26307"
/db_xref="IMGT/GENE-DB:26307"
/db_xref="MIM:26307"
CDS 288..1472
/gene="HEXDC"
/gene_synonym="FLJ23825"
/codon_start=1
/product="HEXDC protein"
/protein_id="AAH18205.2"
/db_xref="GeneID:284004"
/db_xref="HGNC:HGNC:26307"
/db_xref="IMGT/GENE-DB:26307"
/db_xref="MIM:26307"
/translation="MEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLEL
HPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTP
LVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCGFPQLWAA
SAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTDSLQGIILTGWQRYDHYSVLCEL
LPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGISSLEKTDPVREGAGSFPGSNILAL
VTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTL
VQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEVSAPPLPPTSPGRDVAQ
DP"
BASE COUNT 355 a 527 c 546 g 324 t
ORIGIN
1 gaaatattga aatgtcaggt tccacgccat ttcagatgag attagttcat ttagacctta
61 aaggagctcc accaaaggtc tcgtacctct cagagatttt tcctctgttc cgtgcgctag
121 gtgcaaacgg cctcctcatt gagtatgaag acatgtttcc ctacgagggc cctctgaggc
181 tgctgagggc caagtacgcc tacagcccct ctgaaatcaa agagatcttg catctggctg
241 gactcaatga gctggaggtg attcccttgg tgcagacatt tggacacatg gagtttgtgc
301 tgaagcacac ggccttcgcc cacctgcggg aggtgggctc cttcccctgc accctgaacc
361 cccacgaggc agagtccctg gcgctggtgg gcgccatgat tgaccaggtc ctggagctac
421 acccaggcgc ccagcggctg cacatcgggt gtgatgaggt ctattacctc ggagaggggg
481 aggcctcgcg ccggtggcta cagcaagagc agaacagcac ggggaagttg tgcctgtcac
541 acatgcgggc ggtggccagc ggcgtgaagg cccggcgccc cagcgtgaca cccctggtgt
601 gggacgacat gctccgagac ctgcctgagg accagctcgc agcgtccggg gtgccgcagc
661 tggtggagcc ggtgctctgg gactacacgg ccgacctgga tgtgcacggc aaggtcctcc
721 tcatgcagaa gtaccggcgg tgcggctttc cgcagctgtg ggcagccagt gccttcaagg
781 gtgccacggg gcccagccag gccgtgcccc ctgttgagca ccacctcagg aaccacgtgc
841 agtggctgca ggtggcgggc agcgggccca cggactcact gcagggcatc atcctgaccg
901 gctggcagag gtacgaccac tactctgtgc tgtgcgagct gctgcccgca ggagtcccgt
961 ccctggccgc ctgcctgcag ttgcttctac gcggaggatt tgatgaagat gttaaagcga
1021 aagtggagaa ccttctcggg atttccagcc tggaaaaaac ggaccctgtt agggaggggg
1081 ccggctcctt ccctggcagc aacatccttg cccttgtcac acaagtcagc ctccatctgc
1141 gcagctctgt ggatgcgctg ctggagggca acaggtatgt cactggctgg ttcagcccct
1201 accaccgcca gcggaagctc atccacccgg tcatggttca gcacatccag cccgcagcgc
1261 tcagcctcct ggcacagtgg agcaccctcg tgcaggagct ggaggctgcc ctgcagctgg
1321 ctttctaccc ggatgccgtg gaggagtggc tggaggaaaa cgtgcacccc agcctgcagc
1381 ggctgcaagc tctgctgcag gacctcagcg aggtgtctgc ccccccgctg ccacccacca
1441 gccctggcag ggacgttgct caggacccct gaggggagag ctcatgccag ggggctcctg
1501 ctggaggctg ggggggctct gcactgccaa atggcctggg caatacgggc ccacgtgggc
1561 gtcgtgccct ctggcccagc agtgtcttgc ccacactcag ttcctgaggg ccctgggcag
1621 cccctggggg agagactaga aaacacagaa ggaagcagca cagggagacc cgctttgtga
1681 tctgcatgtg tgacactgat tctttggaaa taaagagtgg aagctgcaaa aaaaaaaaaa
1741 aaaaaaaaaa aa
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