LOCUS BC018123 2803 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain 5, mRNA (cDNA clone MGC:9155 IMAGE:3904914),
complete cds.
ACCESSION BC018123
VERSION BC018123.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2803)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2803)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: i Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37577156.
FEATURES Location/Qualifiers
source 1..2803
/db_xref="H-InvDB:HIT000038281"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9155 IMAGE:3904914"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2803
/gene="CAPN5"
/gene_synonym="HTRA3"
/gene_synonym="nCL-3"
/db_xref="GeneID:726"
/db_xref="HGNC:HGNC:1482"
/db_xref="MIM:602537"
CDS 186..2108
/gene="CAPN5"
/gene_synonym="HTRA3"
/gene_synonym="nCL-3"
/codon_start=1
/product="calpain 5"
/protein_id="AAH18123.1"
/db_xref="GeneID:726"
/db_xref="HGNC:HGNC:1482"
/db_xref="MIM:602537"
/translation="MFSCVKPYEDQNYSALRRDCRRRKVLFEDPLFPATDDSLYYKGT
PGPAVRWKRPKGICEDPRLFVDGISSHDLHQGQVGNCWFVAACSSLASRESLWQKVIP
DWKEQEWDPEKPNAYAGIFHFHFWRFGEWVDVVIDDRLPTVNNQLIYCHSNSRNEFWC
ALVEKAYAKLAGCYQALDGGNTADALVDFTGGVSEPIDLTEGDFANDETKRNQLFERM
LKVHSRGGLISASIKAVTAADMEARLACGLVKGHAYAVTDVRKVRLGHGLLAFFKSEK
LDMIRLRNPWGEREWNGPWSDTSEEWQKVSKSEREKMGVTVQDDGEFWMTFEDVCRYF
TDIIKCRVINTSHLSIHKTWEEARLHGAWTLHEDPRQNRGGGCINHKDTFFQNPQYIF
EVKKPEDEVLICIQQRPKRSTRREGKGENLAIGFDIYKVEENRQYRMHSLQHKAASSI
YINSRSVFLRTDQPEGRYVIIPTTFEPGHTGEFLLRVFTDVPSNCRELRLDEPPHTCW
SSLCGYPQLVTQVHVLGAAGLKDSPTGANSYVIIKCEGDKVRSAVQKGTSTPEYNVKG
IFYRKKLSQPITVQVWNHRVLKDEFLGQVHLKADPDNLQALHTLHLRDRNSRQPSNLP
GTVAVHILSSTSLMAV"
BASE COUNT 586 a 923 c 768 g 526 t
ORIGIN
1 gcgagcgcca gcccccgccg caggccagtc ccagctggat ctccggccag agcccgaggc
61 tgctgcgccg ggcggctgca gcctccgctc cagcgcccgc gccgtgccct gcatcccggg
121 agcccggctg gacccgcggc ggctcggccg gtgttccccc tcccctccct ggggcagcag
181 ccaccatgtt ctcgtgtgtg aagccctatg aggaccagaa ctactcagcc ctgaggcggg
241 actgccggcg caggaaggtg ctcttcgagg accccctctt ccccgccact gacgactcac
301 tctactataa gggcacgccg gggcccgccg tcaggtggaa gcgacccaag ggcatctgcg
361 aggacccccg cctctttgtg gatggcatca gctcccacga cctgcaccag ggccaggtgg
421 gcaactgctg gtttgtggca gcctgctcgt cacttgcctc ccgggagtcg ctgtggcaaa
481 aggtcatccc agactggaag gagcaggaat gggaccccga aaagcccaac gcctacgcgg
541 gcatcttcca cttccacttc tggcgcttcg gggaatgggt ggacgtggtc atcgatgacc
601 ggctgcccac agtcaacaac cagctcatct actgccactc caactcccgc aatgagtttt
661 ggtgcgccct agtggagaag gcctatgcca aactggcagg ctgttaccag gccctggatg
721 gaggcaacac agcagacgca ctggtggact tcacgggtgg tgtttctgag cccatcgacc
781 tgaccgaggg tgactttgcc aacgatgaga ctaagaggaa ccagctcttt gagcgcatgt
841 taaaggtgca cagccggggc ggcctcatca gtgcctccat caaggcagtg acagcagctg
901 acatggaggc ccgcctggcg tgcggcctgg taaagggcca cgcatacgcc gtcactgatg
961 tgcgcaaggt gcgcctgggc cacggcctac tggccttctt caagtcagag aagttggaca
1021 tgatccgcct gcgcaacccc tggggcgagc gggagtggaa cgggccctgg agtgacacct
1081 cggaggagtg gcagaaagtg agcaagagtg agcgggagaa gatgggtgtg accgtgcagg
1141 acgacggtga gttctggatg accttcgagg acgtgtgccg gtacttcacg gacatcatca
1201 agtgccgcgt gatcaacaca tcccacctga gcatccacaa gacgtgggag gaggcccggc
1261 tgcatggcgc ctggacgctg catgaggacc cgcgacagaa ccgcggtggc ggctgcatca
1321 accacaagga caccttcttc cagaacccac agtacatctt cgaagtcaag aagccagaag
1381 atgaagtcct gatctgcatc cagcagcggc caaagcggtc tacgcgccgg gagggcaagg
1441 gtgagaacct ggccattggc tttgacatct acaaggtgga ggagaaccgc cagtaccgca
1501 tgcacagcct gcagcacaag gccgccagct ccatctacat caactcacgc agcgtcttcc
1561 tgcgcaccga ccagcccgag ggccgctatg tcatcatccc cacaaccttc gagccaggcc
1621 acactggcga gttcctgctc cgagtcttca ctgatgtgcc ctccaactgc cgggagctgc
1681 gcctggatga gcccccacac acctgctgga gctccctctg tggctacccc cagctggtga
1741 cccaggtaca tgtcctggga gctgctggcc tcaaggactc cccaacaggg gctaactctt
1801 atgtgatcat caagtgtgag ggagacaaag tccgctcggc tgtgcagaag ggcacctcca
1861 caccagagta caatgtgaaa ggcatcttct accgcaagaa gctgagccag cccatcactg
1921 tacaggtctg gaaccaccga gtgctgaagg atgaatttct gggccaggtg cacctaaagg
1981 ctgacccgga caacctccag gccctgcata ccctccacct ccgggaccga aatagccggc
2041 agcccagcaa cctgccaggc actgtggccg tgcacattct cagcagcacc tccctcatgg
2101 ctgtctgaca cctgcccacc tacctggctc tgaccgttcc caccaccatc tgcatgtccc
2161 cactgggcct gagtctagcc tgggagccag gatactgggg tccttttccc actcttccac
2221 tgacttgctg tgtgacctta ggaagtctct gcccctctct cagcctcagt gtcccgaggg
2281 ccccgaagca ttccattctc gtggaggagt ttccttgctg agatttcaaa tagtcctccc
2341 cacctcaact gtcaccactg ctaagggact ctatccattg agcacatttt cctaaggccc
2401 tgctgtctgc cgaggagcgc caagaagatg tcacttgttt acacacgaac tgccacatcc
2461 ccaagctccg ttcttgcccc tcgtgtccta ggcccaaccc agcctcccag acctcacttt
2521 ccccatcagc aatacctggt gttctcccac cttgaaagga ctcttggctc ctgccgggtt
2581 cctgctcagg ctggaattgg gaaaatatgc aggtgacatt tgttcattct ctaatcccat
2641 cctctcaccc atccatttcc tcactcagtg gagatttgcc aaatgaataa acgacacctt
2701 tgaggcccca ggtgaagcgg ggccctactc cggcctctgc cttgggcctc gcctctgtcc
2761 tcaggtcctc tcagaggcag atacctaaaa aaaaaaaaaa aaa
//