LOCUS BC017882 999 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) subunit, alpha type,
6, mRNA (cDNA clone MGC:22756 IMAGE:4278372), complete cds.
ACCESSION BC017882
VERSION BC017882.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 999)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 999)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: k Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..999
/db_xref="H-InvDB:HIT000038178"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22756 IMAGE:4278372"
/tissue_type="Brain, primitive neuroectodermal"
/clone_lib="NIH_MGC_56"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..999
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
CDS 74..814
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/codon_start=1
/product="proteasome (prosome, macropain) subunit, alpha
type, 6"
/protein_id="AAH17882.1"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
/translation="MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRG
KDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK
YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY
CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVG
VVTVENPKFRILTEAEIDAHLVALAERD"
BASE COUNT 312 a 191 c 237 g 259 t
ORIGIN
1 gggaggtgct tgtgtgcctg gtgcgggagc tacggggccc agggattgtg tttaaagtag
61 tgcttgtacc aacatgtccc gtggttccag cgcgggtttt gaccgccaca ttaccatttt
121 ttcacccgag ggtcggctct accaagtaga atatgctttt aaggctatta accagggtgg
181 ccttacatca gtagctgtca gagggaaaga ctgtgcagta attgtcacac agaagaaagt
241 acctgacaaa ttattggatt ccagcacagt gactcactta ttcaagataa ctgaaaacat
301 tggttgtgtg atgaccggaa tgacagctga cagcagatcc caggtacaga gggcacgcta
361 tgaggcagct aactggaaat acaagtatgg ctatgagatt cctgtggaca tgctgtgtaa
421 aagaattgcc gatatttctc aggtctacac acagaatgct gaaatgaggc ctcttggttg
481 ttgtatgatt ttaattggta tagatgaaga gcaaggccct caggtatata agtgtgatcc
541 tgcaggttac tactgtgggt ttaaagccac tgcagcggga gttaaacaaa ctgagtcaac
601 cagcttcctt gaaaaaaaag tgaagaagaa atttgattgg acatttgagc agacagtgga
661 aactgcaatt acatgcctgt ctactgttct atcaattgat ttcaaacctt cagaaataga
721 agttggagta gtgacagttg aaaatcctaa attcaggatt cttacagaag cagagattga
781 tgctcacctt gttgctctag cagagagaga ctaaacattg tcgttagttt accagatccg
841 tgatgccact tacctgtgtg tttggtaaca acaaaccaac atcatggagg tccctggatt
901 gaaaaaggag cctctcccac tcctcctacc accgaagtgg ttaggactct atataaataa
961 aaacaaggct tttgaaaaaa aaaaaaaaaa aaaaaaaaa
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