LOCUS BC017798 1919 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ankyrin repeat domain 49, mRNA (cDNA clone MGC:22343
IMAGE:4655138), complete cds.
ACCESSION BC017798
VERSION BC017798.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1919)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1919)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: h Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41350197.
FEATURES Location/Qualifiers
source 1..1919
/db_xref="H-InvDB:HIT000038138"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22343 IMAGE:4655138"
/tissue_type="Lung, mucoepidermoid carcinoma"
/clone_lib="NIH_MGC_59"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1919
/gene="ANKRD49"
/gene_synonym="FGIF"
/gene_synonym="FLJ20189"
/gene_synonym="GBIF"
/db_xref="GeneID:54851"
/db_xref="HGNC:HGNC:25970"
CDS 123..842
/gene="ANKRD49"
/gene_synonym="FGIF"
/gene_synonym="FLJ20189"
/gene_synonym="GBIF"
/codon_start=1
/product="ankyrin repeat domain 49"
/protein_id="AAH17798.1"
/db_xref="GeneID:54851"
/db_xref="HGNC:HGNC:25970"
/translation="MEKEKGNDDGIPDQENSLDFSEHFNQLELLETHGHLIPTGTQSL
WVGNSDEDEEQDDKNEEWYRLQEKKMEKDPSRLLLWAAEKNRLTTVRRLLSEKATHVN
TRDEDEYTPLHRAAYSGHLDIVQELIAQGADVHAVTVDGWTPLHSACKWNNTRVASFL
LQHDADINAQTKGLLTPLHLAAGNRDSKDTLELLLMNRYVKPGLKNNLEETAFDIARR
TSIYHYLFEIVEGCTNSSPQS"
BASE COUNT 652 a 349 c 358 g 560 t
ORIGIN
1 agatgcaagg cggcgatttt cccttctgtc agatcttgat gaacaaagca gtcataattc
61 atctctagaa agatttatat cctggcattt gaaatgcttt ttatttagaa tagtagtaaa
121 aaatggaaaa agaaaaagga aatgatgatg gaataccaga ccaagagaat tccttggatt
181 tttctgaaca ctttaaccaa cttgaattgt tggaaacaca tggacacctt attcctactg
241 gtactcaaag tctttgggta ggcaattctg atgaagatga ggagcaagat gacaaaaatg
301 aagagtggta tcgattgcaa gaaaaaaaaa tggaaaaaga cccaagcaga ttgcttcttt
361 gggctgctga aaaaaatcgg cttaccacag tgcggagact cctttctgaa aaggccactc
421 acgtgaacac tagggatgaa gatgagtata cccctcttca tcgagcagcc tacagtggac
481 acttagatat tgttcaggag ctcattgcac agggggccga tgttcatgca gtgactgtgg
541 atggctggac gcccctgcac agtgcttgta agtggaataa taccagagtg gcttctttct
601 tactgcagca tgatgcagat atcaatgccc aaacaaaagg cctcttgacc cccttgcatc
661 ttgctgctgg gaacagagac agcaaggata ccctagaact cctcctgatg aaccgttacg
721 tcaaaccagg gctgaaaaac aacttggaag aaactgcatt tgatattgcc aggaggacaa
781 gtatctatca ctacctcttt gaaattgtgg aaggctgtac aaattcttca cctcagtctt
841 aacaattcta gtaattttcc taagtttcta aataccagtg cctcctgtgt gtgagatgta
901 ttcccataat caaagttgac gtcaaacatc ttactacaaa aattcagtga cattcattat
961 aacattcttc caagtgaatt gcctgacttt gatgtcaaaa tgtatttgaa agtaatttgc
1021 atatatcttt aattatttct gtggagtttg tgattttttt atcagaaata attttaatgt
1081 gtgtatactt aaaaacttga cacgggttgt acagaaactg gtatttttgg tgctgataca
1141 agagaaatgt atttttaaat atcccacatc ctggatcttt gttgggtatt tagtatattg
1201 acatatattt ttataaggtg aggtaactca gaacttaatt taaaagtctt aaatattctg
1261 atacaattca gctgtcttct ctaccttacc atagccagtt gctttcattt taaaccagag
1321 caagtaacat attagtgact tgaatcttca taagttaaag taaaaaacag caaaaaacct
1381 agatctttgt cttttagaac acagaccatt ttcgggaaag cagttagcta agtgtttaat
1441 tcatgaatat tgtatactgc atcccctacc acaatttaca caatcctgtg gatagtccta
1501 cctcaccctg gtcaacctac atgatcctta agctaatggc gaatcacgat gaccttgtag
1561 acatgcacac aactatacct ttgtccaaca gatcataata tatctgctat ccaactggtt
1621 ttacctgcct aatcctactg atttgggcac tgcttgtata gtctctcaag ttcacaggaa
1681 atgttgattt tctaaggtcc tcatttttac agagtataca ggcaaagtga caggggaaaa
1741 ggaattagtc taagagtaag gggatgatta ttatattgag gctaaaacca caaagtggct
1801 caggctttaa aaaaaaaaac actgtggata atgacaaaaa gcataagtaa aaatatttga
1861 gaaaaataaa gtacaagttt tgaacaacga aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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