LOCUS BC017699 2010 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:21097 IMAGE:4177580), complete cds.
ACCESSION BC017699
VERSION BC017699.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2010)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2010)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705786.
FEATURES Location/Qualifiers
source 1..2010
/db_xref="H-InvDB:HIT000038083"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21097 IMAGE:4177580"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2010
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 136..879
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH17699.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSLRSIQRSLLCKD"
BASE COUNT 350 a 557 c 541 g 562 t
ORIGIN
1 cggggtctgg gggtgacatt gcaccgcgcc cctcgtgggg tcgcgttgcc accccacgcg
61 gactccccag ctggcgcgcc cctcccattt gcctgtcctg gtcaggcccc cacccccctt
121 cccacctgac cagccatggg ggctgcggtg tttttcggct gcactttcgt cgcgttcggc
181 ccggccttcg cgcttttctt gatcactgtg gctggggacc cgcttcgcgt tatcatcctg
241 gtcgcagggg catttttctg gctggtctcc ctgctcctgg cctctgtggt ctggttcatc
301 ttggtccatg tgaccgaccg gtcagatgcc cggctccagt acggcctcct gatttttggt
361 gctgctgtct ctgtccttct acaggaggtg ttccgctttg cctactacaa gctgcttaag
421 aaggcagatg aggggttagc atcgctgagt gaggacggaa gatcacccat ctccatccgc
481 cagatggcct atgtttctgg tctctccttc ggtatcatca gtggtgtctt ctctgttatc
541 aatattttgg ctgatgcact tgggccaggt gtggttggga tccatggaga ctcaccctat
601 tacttcctga cttcagcctt tctgacagca gccattatcc tgctccatac cttttgggga
661 gttgtgttct ttgatgcctg tgagaggaga cggtactggg ctttgggcct ggtggttggg
721 agtcacctac tgacatcggg actgacattc ctgaacccct ggtatgaggc cagcctgctg
781 cccatctatg cagtcactgt ttccatgggg ctctgggcct tcatcacagc tggagggtcc
841 ctccgaagta ttcagcgcag cctcttgtgt aaggactgac tacctggact gatcgcctga
901 cagatcccac ctgcctgtcc actgcccatg actgagccca gccccagccc gggtccattg
961 cccacattct ctgtctcctt ctcgtcggtc taccccacta cctccagggt tttgctttgt
1021 ccttttgtga ccgttagtct ctaagcttta ccaggagcag cctgggttca gccagtcagt
1081 gactggtggg tttgaatctg cacttatccc caccacctgg ggaccccctt gttgtgtcca
1141 ggactccccc tgtgtcagtg ctctgctctc accctgccca agactcacct cccttcccct
1201 ctgcaggccg acggcaggag gacagtcggg tgatggtgta ttctgccctg cgcatcccac
1261 ccgaggactg agggaaccta ggggggaccc ctgggcctgg ggtgccctcc tgatgtcctc
1321 gccctgtatt tctccatctc cagttctgga cagtgcaggt tgccaagaaa agggacctag
1381 tttagccatt gccctggaga tgaaattaat ggaggctcaa ggatagatga gctctgagtt
1441 tctcagtact ccctcaagac tggacatctt ggtctttttc tcaggcctga gggggaacca
1501 tttttggtgt gataaatacc ctaaactgcc tttttttctt ttttgaggtg gggggaggga
1561 ggaggtatat tggaactctt ctaacctcct tgggctatat tttctctcct cgagttgctc
1621 ctcatggctg ggctcatttc ggtccctttc tccttggtcc cagaccttgg gggaaaggaa
1681 ggaagtgcat gtttgggaac tggcattact ggaactaatg gttttaacct ccttaaccac
1741 cagcatccct cctctcccca aggtgaagtg gagggtgctg tggtgagctg gccactccag
1801 agctgcagtg ccactggagg agtcagacta ccatgacatc gtagggaagg aggggagatt
1861 tttttgtagt ttttaattgg ggtgtgggag gggcggggag gttttctata aactgtatca
1921 ttttctgctg agggtggagt gtcccatcct tttaatcaag gtgattgtga ttttgactaa
1981 taaaaaagaa tttgtaaaaa aaaaaaaaaa
//