LOCUS BC017166 2628 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens glypican 4, mRNA (cDNA clone MGC:9107 IMAGE:3922774),
complete cds.
ACCESSION BC017166
VERSION BC017166.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2628)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2628)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: p Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21614524.
FEATURES Location/Qualifiers
source 1..2628
/db_xref="H-InvDB:HIT000050670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9107 IMAGE:3922774"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2628
/gene="GPC4"
/gene_synonym="K-glypican"
/db_xref="GeneID:2239"
/db_xref="HGNC:HGNC:4452"
/db_xref="MIM:300168"
CDS 507..2177
/gene="GPC4"
/gene_synonym="K-glypican"
/codon_start=1
/product="glypican 4"
/protein_id="AAH17166.1"
/db_xref="GeneID:2239"
/db_xref="HGNC:HGNC:4452"
/db_xref="MIM:300168"
/translation="MARFGLPALLCTLAVLSAALLAAELKSKSCSEVRRLYVSKGFNK
NDAPLHEINGDHLKICPQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRY
KKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLEEM
LNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAA
RTFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRG
CLANQGDLDFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVS
QKVFQGCGPPKPLPAGRISRSISESAFSARFRPHHPEERPTTAAGTSLDRLVTDVKEK
LKQAKKFWSSLPSNVCNDERMAAGNGNEDDCWNGKGKSRYLFAVTGNGLANQGNNPEV
QVDTSKPDILILRQIMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCP
SEFDYNATDHAGKSANEKADSAGVRPGAQAYLLTVFCILFLVMQREWR"
BASE COUNT 630 a 706 c 657 g 635 t
ORIGIN
1 ctgagaaggg cacagccgcg cggcggaggg cagagtcagc cgagccgagt ccagccggac
61 gagcggacca gcgcagggca gcccaagcag cgcgcagcga acgcccgccg ccgcccacac
121 cctctgcggt ccccgcggcg cctgccaccc ttccctcctt ccccgcgtcc ccgcctcgcc
181 ggccagtcag cttgccgggt tcgctgcccc gcgaaacccc gaggtcacca gcccgcgcct
241 ctgcttccct gggccgcgcg ccgcctccac gccctccttc tcccctggcc cggcgcctgg
301 caccggggac cgttgcctga cgcgaggccc agctctactt ttcgccccgc gtctcctccg
361 cctgctcgcc tcttccacca actccaactc cttctccctc cagctccact cgctagtccc
421 cgactccgcc agccctcggc ccgctgccgt agcgccgctt cccgtccggt cccaaaggtg
481 ggaacgcgtc cgccccggcc cgcaccatgg cacggttcgg cttgcccgcg cttctctgca
541 ccctggcagt gctcagcgcc gcgctgctgg ctgccgagct caagtcgaaa agttgctcgg
601 aagtgcgacg tctttacgtg tccaaaggct tcaacaagaa cgatgccccc ctccacgaga
661 tcaacggtga tcatttgaag atctgtcccc agggttctac ctgctgctct caagagatgg
721 aggagaagta cagcctgcaa agtaaagatg atttcaaaag tgtggtcagc gaacagtgca
781 atcatttgca agctgtcttt gcttcacgtt acaagaagtt tgatgaattc ttcaaagaac
841 tacttgaaaa tgcagagaaa tccctgaatg atatgtttgt gaagacatat ggccatttat
901 acatgcaaaa ttctgagcta tttaaagatc tcttcgtaga gttgaaacgt tactacgtgg
961 tgggaaatgt gaacctggaa gaaatgctaa atgacttctg ggctcgcctc ctggagcgga
1021 tgttccgcct ggtgaactcc cagtaccact ttacagatga gtatctggaa tgtgtgagca
1081 agtatacgga gcagctgaag cccttcggag atgtccctcg caaattgaag ctccaggtta
1141 ctcgtgcttt tgtagcagcc cgtactttcg ctcaaggctt agcggttgcg ggagatgtcg
1201 tgagcaaggt ctccgtggta aaccccacag cccagtgtac ccatgccctg ttgaagatga
1261 tctactgctc ccactgccgg ggtctcgtga ctgtgaagcc atgttacaac tactgctcaa
1321 acatcatgag aggctgtttg gccaaccaag gggatctcga ttttgaatgg aacaatttca
1381 tagatgctat gctgatggtg gcagagaggc tagagggtcc tttcaacatt gaatcggtca
1441 tggatcccat cgatgtgaag atttctgatg ctattatgaa catgcaggat aatagtgttc
1501 aagtgtctca gaaggttttc cagggatgtg gaccccccaa gcccctccca gctggacgaa
1561 tttctcgttc catctctgaa agtgccttca gtgctcgctt cagaccacat caccccgagg
1621 aacgcccaac cacagcagct ggcactagtt tggaccgact ggttactgat gtcaaggaga
1681 aactgaaaca ggccaagaaa ttctggtcct cccttccgag caacgtttgc aacgatgaga
1741 ggatggctgc aggaaacggc aatgaggatg actgttggaa tgggaaaggc aaaagcaggt
1801 acctgtttgc agtgacagga aatggattag ccaaccaggg caacaaccca gaggtccagg
1861 ttgacaccag caaaccagac atactgatcc ttcgtcaaat catggctctt cgagtgatga
1921 ccagcaagat gaagaatgca tacaatggga acgacgtgga cttctttgat atcagtgatg
1981 aaagtagtgg agaaggaagt ggaagtggct gtgagtatca gcagtgccct tcagagtttg
2041 actacaatgc cactgaccat gctgggaaga gtgccaatga gaaagccgac agtgctggtg
2101 tccgtcctgg ggcacaggcc tacctcctca ctgtcttctg catcttgttc ctggttatgc
2161 agagagagtg gagataattc tcaaactctg agaaaaagtg ttcatcaaaa agttaaaagg
2221 caccagttat cacttttcta ccatcctagt gactttgctt tttaaatgaa tggacaacaa
2281 tgtacagttt ttactatgtg gccactggtt taagaagtgc tgactttgtt ttctcattca
2341 gttttgggag gaaaagggac tgtgcattga gttggttcct gctcccccaa accatgttaa
2401 acgtggctaa cagtgtaggt acagaactat agttagttgt gcatttgtga ttttatcact
2461 ctattatttg tttgtatgtt tttttctcat ttcgtttgtg ggtttttttt tccaactgtg
2521 atctcgcctt gtttcttaca agcaaaccag ggtcccttct tggcacgtaa catgtacgta
2581 tttctgaaat attaaatagc tgtacagaaa aaaaaaaaaa aaaaaaaa
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