LOCUS BC017028 1730 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hippocalcin-like 1, mRNA (cDNA clone MGC:9046
IMAGE:3902811), complete cds.
ACCESSION BC017028
VERSION BC017028.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1730)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1730)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913440.
FEATURES Location/Qualifiers
source 1..1730
/db_xref="H-InvDB:HIT000037796"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9046 IMAGE:3902811"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1730
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
CDS 352..933
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/codon_start=1
/product="hippocalcin-like 1"
/protein_id="AAH17028.1"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
/translation="MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLT
VDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLK
WAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNN
DGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF"
BASE COUNT 320 a 547 c 512 g 351 t
ORIGIN
1 gcggactgac gggcgcctcc accttgctcc ctccctggct gccggcttcc ttttgtcttt
61 ctgggcggcg atgagcgcag ggccggcgca gcagctgcgg gcgcacggag gcccgcgctg
121 ctagtcactc ctcccggcct cggcgcgctt gtcccgggca gcggcccggg cccgctgcag
181 ccgccgccgg cgccgaactt gggctcggga agccggcgga ccgcgtcctg cgccggagca
241 ggggcatggt ctagtggccc agtcaggacg cggaaacact ccctggaggt tctgacccac
301 tccctctcag cctccgcctg gtctctggtg tagtcgccgc cgccagccgc catgggcaaa
361 cagaacagca agctgcggcc cgaggtgctg caggacctgc gggagaacac ggagttcacc
421 gaccacgagc tgcaggagtg gtacaagggc ttcctcaagg actgccccac cggccacctg
481 accgtggacg agttcaagaa gatctacgcc aacttcttcc cctacggcga cgcttccaag
541 ttcgccgagc acgtcttccg caccttcgac accaacggcg acggcaccat cgacttccgg
601 gagttcatca ttgcgctgag cgtgacctcg cggggcaagc tggagcagaa gctcaagtgg
661 gccttcagca tgtacgacct ggacggcaac ggctacatca gccgcagcga gatgctggag
721 atcgtgcagg ccatctacaa gatggtgtcg tctgtgatga agatgccgga ggatgagtcc
781 accccggaga agcgcacaga caagatcttc aggcagatgg acaccaacaa tgacggcaaa
841 ctgtccttgg aagaattcat cagaggtgcc aagagcgacc cctccatcgt ccgcctgctg
901 cagtgcgacc ccagcagtgc cagtcagttc tgagcgagcg gcccctggac agttgcagag
961 aaacacaggc ttgtcgtgcc gtttaagctt tgcttgcaag agtggatgcc ccgcaatcgt
1021 tcctgctctc ccgggccccg ggcctggggc atgcgttgca cctgcccggc ccggtggctg
1081 cgcctccctc ctccacctga ccaacgcgac attcctcccc tcacgcctgg cccggtccct
1141 tccagggcaa ctcccaggga tgtggtgaca tgcagggttc aagtgttctt ggttccaggc
1201 acctcccggc tcacggggag ctcagaggtc catgccgagg agaccaggca ggacctcccg
1261 aggctgcgcc ccggccggcc catgcgtttt gtgatcccaa gtgactctgt gggaagggtg
1321 gggacgaggc gtcgggaggg tatacaggga gcccctcccg tgcatggctg cccccccgtt
1381 cattttctcc accacagccg cttgcacgta tagatactgt ggtccccttt cttttaatat
1441 ataaattatg tatggtgaag tggagtgtat tgtgtaggtc ccgtatttaa tgcctctgac
1501 tgcctttgaa gcgcagccct ctgtggcccg cagccccctg agcctggctg ttgtgtggta
1561 tttatgctct ctttgtctgc ctgtttctaa ggaaatgcat gtgtgccctg agccgtgatg
1621 atcctcccat ccgtgttgtg agcacaggca tttgtgtctg gtctgtcctc cctgttgatt
1681 ggtctggcat ttccggtatt aaaatgataa aataaaaaaa aaaaaaaaaa
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