LOCUS BC016924 2445 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 25, mRNA (cDNA clone
MGC:21231 IMAGE:4419084), complete cds.
ACCESSION BC016924
VERSION BC016924.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2445)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2445)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: i Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68160936.
FEATURES Location/Qualifiers
source 1..2445
/db_xref="H-InvDB:HIT000037749"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21231 IMAGE:4419084"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2445
/gene="TRIM25"
/gene_synonym="EFP"
/gene_synonym="RNF147"
/gene_synonym="Z147"
/db_xref="GeneID:7706"
/db_xref="HGNC:HGNC:12932"
/db_xref="MIM:600453"
CDS 45..1937
/gene="TRIM25"
/gene_synonym="EFP"
/gene_synonym="RNF147"
/gene_synonym="Z147"
/codon_start=1
/product="tripartite motif-containing 25"
/protein_id="AAH16924.1"
/db_xref="GeneID:7706"
/db_xref="HGNC:HGNC:12932"
/db_xref="MIM:600453"
/translation="MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQ
GSPYLCPQCRAVYQARPQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPN
AQVACDHCLKEAAVKTCLVCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQH
NRLREFFCPEHSECICHICLVEHKTCSPASLSQASADLEATLRHKLTVMYSQINGASR
ALDDVRNRQQDVRMTANRKVEQLQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDT
IYQILLKKKSEIQTLKEEIEQSLTKRDEFEFLEKASKLRGISTKPVYIPEVELNHKLI
KGIHQSTIDLKNELKQCIGRLQELTPSSGDPGEHDPASTHKSTRPVKKVSKEEKKSKK
PPPVPALPSKLPTFGAPEQLVDLKQAGLEAAAKATSSHPNSTSLKAKVLETFLAKSRP
ELLEYYIKVILDYNTAHNKVALSECYTVASVAEMPQNYRPHPQRFTYCSQVLGLHCYK
KGIHYWEVELQKNNFCGVGICYGSMNRQGPESRLGRNSASWCVEWFNTKISAWHNNVE
KTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLMYKFRVDFTEALYPAFWVFSAGATL
SICSPK"
BASE COUNT 588 a 698 c 685 g 474 t
ORIGIN
1 cggagcgcgg gtgcagcagt tgtgtcccga cccctgggag cgccatggca gagctgtgcc
61 ccctggccga ggagctgtcg tgctccatct gcctggagcc cttcaaggag ccggtcacca
121 ctccgtgcgg ccacaacttc tgcgggtcgt gcctgaatga gacgtgggca gtccagggct
181 cgccatacct gtgcccgcag tgccgcgccg tctaccaggc gcgaccgcag ctgcacaaga
241 acacggtgct gtgcaacgtg gtggagcagt tcctgcaggc cgacctggcc cgggagccac
301 ccgccgacgt ctggacgccg cccgcccgcg cctctgcacc cagcccgaat gcccaggtgg
361 cctgcgacca ctgcttgaag gaggccgccg tgaagacgtg cttggtgtgc atggcctcct
421 tctgtcagga gcacctgcag ccgcacttcg acagccccgc cttccaggac cacccgctgc
481 agccgcccgt tcgcgacctg ttgcgccgca aatgttccca gcacaatcgg ctgcgggaat
541 ttttctgccc cgagcacagc gagtgcatct gccacatctg cctggtggag cataagacct
601 gctctcccgc gtccctgagc caggccagcg ccgacctgga ggccaccctg aggcacaaac
661 taactgtcat gtacagtcag atcaacgggg cgtcgagagc actggatgat gtgagaaaca
721 ggcagcagga tgtgcggatg actgcaaaca gaaaggtgga gcagctacaa caagaataca
781 cggaaatgaa ggctctcttg gacgcctcag agaccacctc gacaaggaag ataaaggaag
841 aggagaagag ggtcaacagc aagtttgaca ccatttatca gattctcctc aagaagaaga
901 gtgagatcca gaccttgaag gaggagattg aacagagcct gaccaagagg gatgagttcg
961 agtttctgga gaaagcatca aaactgcgag gaatctcaac aaagccagtc tacatccccg
1021 aggtggaact gaaccacaag ctgataaaag gcatccacca gagcaccata gacctcaaaa
1081 acgagctgaa gcagtgcatc gggcggctcc aggagctcac ccccagttca ggtgaccctg
1141 gagagcatga cccagcgtcc acacacaaat ccacacgccc tgtgaagaag gtctccaaag
1201 aggaaaagaa atccaagaaa cctccccctg tccctgcctt acccagcaag cttcccacgt
1261 ttggagcccc ggaacagtta gtggatttaa aacaagctgg cttggaggct gcagccaaag
1321 ccaccagctc acatccgaac tcaacatctc tcaaggccaa ggtgctggag accttcctgg
1381 ccaagtccag acctgagctc ctggagtatt acattaaagt catcctggac tacaacaccg
1441 cccacaacaa agtggctctg tcagagtgct atacagtagc ttctgtggct gagatgcctc
1501 agaactaccg gccgcatccc cagaggttca catactgctc tcaggtgctg ggcctgcact
1561 gctacaagaa ggggatccac tactgggagg tggagctgca gaagaacaac ttctgtgggg
1621 taggcatctg ctacggaagc atgaaccggc agggcccaga aagcaggctc ggccgcaaca
1681 gcgcctcctg gtgcgtggag tggttcaaca ccaagatctc tgcctggcac aataacgtgg
1741 agaaaaccct gccctccacc aaggccacgc gggtgggcgt gcttctcaac tgtgaccacg
1801 gctttgtcat cttcttcgct gttgccgaca aggtccacct gatgtataag ttcagggtgg
1861 actttactga ggctttgtac ccggctttct gggtattttc tgctggtgcc acactctcca
1921 tctgctcccc caagtaggca ggctgtaggc acttgggctg actgcctgca gaagtcccaa
1981 gaccctagtg aaaatacagc aggcagaact ctccttggat aattccccaa gaggtcccaa
2041 ggattgggag catgggaggg gagctggcgg gagggtggga ggtgggattt agccaggaaa
2101 ggggtgagag tgattgtgtt gtgggcgagg aggcgtttcc accccctggt gcctatcagg
2161 gcagggtgac ctactcccca ttgttctgga aatctccagg ctgctgggca gctgggcaga
2221 gctctgggaa gtgaagtcat gagtgcccga ttcctcttag agaaaatcca tagctactgt
2281 aggttctgtc ttgggccact tggatctgaa ggctgcccct ttgctctctg gggtagcctt
2341 cagatcttgg tgttttgaat tcttactata gatgttttta aagttccaaa gtcattgagt
2401 ttcaatgtta cataaactcc attacccgca aaaaaaaaaa aaaaa
//