LOCUS BC016763 1146 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D4, mRNA (cDNA clone MGC:22628
IMAGE:4068219), complete cds.
ACCESSION BC016763
VERSION BC016763.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1146)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1146)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 32 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23397671.
FEATURES Location/Qualifiers
source 1..1146
/db_xref="H-InvDB:HIT000037676"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22628 IMAGE:4068219"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_58"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1146
/gene="HOXD4"
/gene_synonym="HHO.C13"
/gene_synonym="Hox-4.2"
/gene_synonym="HOX-5.1"
/db_xref="GeneID:3233"
/db_xref="HGNC:HGNC:5138"
/db_xref="MIM:142981"
CDS 68..835
/gene="HOXD4"
/gene_synonym="HHO.C13"
/gene_synonym="Hox-4.2"
/gene_synonym="HOX-5.1"
/codon_start=1
/product="homeobox D4"
/protein_id="AAH16763.1"
/db_xref="GeneID:3233"
/db_xref="HGNC:HGNC:5138"
/db_xref="MIM:142981"
/translation="MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGA
DFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAP
PPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTA
YTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNT
KGRSSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL"
BASE COUNT 276 a 346 c 329 g 195 t
ORIGIN
1 ggggccctat ggaaggagaa aaaaagacaa cacgagaaaa attagtattt tctaccttct
61 gaaattaatg gtcatgagtt cgtatatggt gaactccaag tatgtggacc ccaagttccc
121 tccgtgcgag gagtatttgc agggcggcta cctaggcgag cagggcgccg actactacgg
181 cggcggcgcg cagggcgcag acttccagcc cccggggctc tacccacggc ccgacttcgg
241 tgagcagcct ttcggaggca gcggccccgg gcctggctcg gcgctgcctg cgcggggtca
301 cggacaagag ccaggcggcc ccggcggtca ctacgccgct ccaggagagc cttgcccagc
361 tcccccggcg cctccgccgg cgcccctgcc tggcgcccgg gcctacagtc agtccgaccc
421 caagcagccg ccctccggga cggcactcaa gcagccggcc gtggtctacc cctggatgaa
481 gaaggtgcac gtgaattcgg tgaaccccaa ctacaccggt ggggaaccca agcggtcccg
541 aacggcctac acccggcagc aagtcctaga actggaaaaa gaatttcatt ttaacaggta
601 tctgacaagg cgccgtcgga ttgaaatcgc tcacaccctg tgtctgtcgg agcgccagat
661 caagatctgg ttccagaacc ggaggatgaa gtggaaaaaa gatcataagc tgcccaacac
721 taaaggcagg tcatcgtcct catcttcctc ctcatcttgc tcctcctcag tcgcccccag
781 ccagcattta cagccgatgg ccaaagacca ccacacggac ctgacgacct tatagaagtg
841 gggaccctgg gcccatctct ccctgcgcac caggctgagc cgaagctgcg ggggcaggcc
901 gggcctgctg tcacctcgct gggctctaag gtactgtggg gtggacctgg gacaagcagg
961 ccgccctcgg actaggttag catcctgccc gagggcagcc ccctccctag agcgggatgg
1021 ggatgggagg gggggcggga ttctctctct aagtatatta tatggcagga gctactgaga
1081 acataaaatc ttggcgagtc attaaactta tgaaaaacaa aaaaaaaaaa aaaaaaaaaa
1141 aaaaaa
//