LOCUS BC016649 3315 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ephrin-B1, mRNA (cDNA clone MGC:8782 IMAGE:3867060),
complete cds.
ACCESSION BC016649
VERSION BC016649.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3315)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3315)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: f Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31317225.
FEATURES Location/Qualifiers
source 1..3315
/db_xref="H-InvDB:HIT000037613"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8782 IMAGE:3867060"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3315
/gene="EFNB1"
/gene_synonym="CFND"
/gene_synonym="EFL3"
/gene_synonym="Elk-L"
/gene_synonym="LERK2"
/gene_synonym="MGC8782"
/db_xref="GeneID:1947"
/db_xref="HGNC:HGNC:3226"
/db_xref="MIM:300035"
CDS 781..1821
/gene="EFNB1"
/gene_synonym="CFND"
/gene_synonym="EFL3"
/gene_synonym="Elk-L"
/gene_synonym="LERK2"
/gene_synonym="MGC8782"
/codon_start=1
/product="ephrin-B1"
/protein_id="AAH16649.1"
/db_xref="GeneID:1947"
/db_xref="HGNC:HGNC:3226"
/db_xref="MIM:300035"
/translation="MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKF
LSGKGLVIYPKIGDKLDIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCN
RPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKI
IMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKS
GPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR
AAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEM
PPQSPANIYYKV"
BASE COUNT 666 a 993 c 1014 g 642 t
ORIGIN
1 gcacagcggc agcggaggga gtctatgcga gctggacagc agtgggaggt ttgtgaggct
61 cgcactggcc gcagaccctc gggctcgatc gcccgggagc caggactcgg cgacgcgagg
121 ctgccgggct acccggccga ggcttcgggg gcgcaaacta atgggactgg ctcgctcggc
181 agcatctccc cgctcttcta agtacactga gcagggcccg cgctgaagta gaagctgtcc
241 gggggcgcgt agcccggagt cccagtgtgg cccggaggaa cggagcccgt gccagggcgg
301 cccagtcggg agcccgggga ccgagcttgt gctgtgggga aacccccact tcttccaagg
361 gacagcgatc ccgggacggt cgaggcgtcg gggcggtcac cgagacctct gcgggaagac
421 cccgtcgggg agagggcgcg cagccccgaa gcgtctcggg aagtcgagcg gaatcgggcg
481 ggatcacccg ggggcgcaga gcccccgtcg cgcctcgtgc ggcagcggag agcccaggag
541 aacgagccct cgggggccga agcccatgcc cgggttgggg gcggctgccc agtgagtcct
601 cctggccggc cgggcggaga agagcgacac cgaagccggc gggaggggag cacttcaagg
661 ccggcggctg cggaggatgg gcgcctgagc ggctccgagc gcagcgcggc agaggaaggc
721 gaggcgagct ttggtgagga ggcgccaagg gatcccgaag tgcagtctgc ccccgggaag
781 atggctcggc ctgggcagcg ttggctcggc aagtggcttg tggcgatggt cgtgtgggcg
841 ctgtgccggc tcgccacacc gctggccaag aacctggagc ccgtatcctg gagctccctc
901 aaccccaagt tcctgagtgg gaagggcttg gtgatctatc cgaaaattgg agacaagctg
961 gacatcatct gcccccgagc agaagcaggg cggccctatg agtactacaa gctgtacctg
1021 gtgcggcctg agcaggcagc tgcctgtagc acagttctcg accccaacgt gttggtcacc
1081 tgcaataggc cagagcagga aatacgcttt accatcaagt tccaggagtt cagccccaac
1141 tacatgggcc tggagttcaa gaagcaccat gattactaca ttacctcaac atccaatgga
1201 agcctggagg ggctggaaaa ccgggagggc ggtgtgtgcc gcacacgcac catgaagatc
1261 atcatgaagg ttgggcaaga tcccaatgct gtgacgcctg agcagctgac taccagcagg
1321 cccagcaagg aggcagacaa cactgtcaag atggccacac aggcccctgg tagtcggggc
1381 tccctgggtg actctgatgg caagcatgag actgtgaacc aggaagagaa gagtggccca
1441 ggtgcaagtg ggggcagcag cggggaccct gatggcttct tcaactccaa ggtggcattg
1501 ttcgcggctg tcggtgccgg ttgcgtcatc ttcctgctca tcatcatctt cctgacggtc
1561 ctactactga agctacgcaa gcggcaccgc aagcacacac agcagcgggc ggctgccctc
1621 tcgctcagta ccctggccag tcccaagggg ggcagtggca cagcgggcac cgagcccagc
1681 gacatcatca ttcccttacg gactacagag aacaactact gcccccacta tgagaaggtg
1741 agtggggact acgggcaccc tgtctacatc gtccaagaga tgccgcccca gagcccggcg
1801 aacatctact acaaggtctg agtgcccggc acggcctcag gcccccgagg gacagtcggc
1861 ctggaccgga cctctccttt cgcccccaca ccccctcccc ttgccagctg tgcccacctt
1921 tgtatttagt tttgtagttt cttggctttt ataatccccc tttttccctg ccccctgggc
1981 ttcggagggg ggtgcttgtg cccctaaccc ccatgctctt gtgccttccc cctctggcca
2041 ggcctctggg ctccgtgggg gcgccccttc ttggaaggca gggctggaca ctgatggaca
2101 gcaggcaggg agacagtccc ctggccctgc ccctccctcg ccccccttgc caccttccca
2161 ggactgcttg tccgctatca tcactgtttt taatgctttt gtgttcattt tttagctgtc
2221 aactcatttt catctgtttt ttgaagaaaa atggaaaaat gtaaaaggca gcccctcccc
2281 aggctttgtg agcctggccc aagccagtac aagagggcct ggggcacgat gtggtcagcc
2341 aggaagcata ggatgccatt tcttttatag attccttggt atttctggtg gggtaagggg
2401 caggccaggg ctgttcacgc ccatgaggga agaggaaagt gccactgggc aaggtgtccc
2461 accctcccct cctgaccctc ctacgaggct tatcctggca atggggtagt cactgccacc
2521 cttccacaca cacacacaca cacacacaca cacaaaaatc ccttccttgt gggattcttg
2581 ggcatctcct gcctccctca ctctcacggt aattaatgtc ttaattggct gttgcctggg
2641 gaacaggaga gctgctgcag gcagatgacc tcatgggggg tggagggagg tgaggtgccc
2701 aggtggctat ttgccctgca gagctgggag tttcaccccc accccccacc ctgttctctc
2761 cttacctttg gcatcctttg gcctggtggg gaaacagagg cccagggtgg agacctaagc
2821 gggtataaga ccaggtggcc tgctcctttt ctgggcccta gcacaggtgg gtaaccccca
2881 cccaacccag ctcctgctgc tgtcccagtc ttgggctggg gcctggaaag aggaagaggc
2941 tgcctggggc tgggccagcc cgctgtgcac tttgacccca gttccttgcc agcacggctg
3001 ctaacagact gccacttgag tgcgccttgc aggcactccc agagcagcca tggaaggagc
3061 tggccctcac accatccacc tccacactgc ctcctggcca gctgcccacc ccagtgccag
3121 gtgggagagg gagcagaaca gccagcccct tccaggtggc agtcggaagg gtttttgttt
3181 ttgtttctgt tgccatttgt gtaaatacta gtctttttgg aaaaaaaata atgtaaagat
3241 gttttgtata aactctgaat tattttcttg ttgctttttt cttagaaaaa aatgagaact
3301 aaaaaaaaaa aaaaa
//