LOCUS BC016481 2328 bp mRNA linear HUM 22-DEC-2006
DEFINITION Homo sapiens N-acylsphingosine amidohydrolase (acid ceramidase) 1,
mRNA (cDNA clone MGC:9327 IMAGE:3923451), complete cds.
ACCESSION BC016481
VERSION BC016481.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2328)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2328)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: d Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30089927.
FEATURES Location/Qualifiers
source 1..2328
/db_xref="H-InvDB:HIT000037585"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9327 IMAGE:3923451"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2328
/gene="ASAH1"
/gene_synonym="AC"
/gene_synonym="FLJ21558"
/gene_synonym="FLJ22079"
/gene_synonym="PHP"
/gene_synonym="PHP32"
/db_xref="GeneID:427"
/db_xref="HGNC:HGNC:735"
/db_xref="MIM:228000"
CDS 36..1223
/gene="ASAH1"
/gene_synonym="AC"
/gene_synonym="FLJ21558"
/gene_synonym="FLJ22079"
/gene_synonym="PHP"
/gene_synonym="PHP32"
/codon_start=1
/product="N-acylsphingosine amidohydrolase (acid
ceramidase) 1"
/protein_id="AAH16481.1"
/db_xref="GeneID:427"
/db_xref="HGNC:HGNC:735"
/db_xref="MIM:228000"
/translation="MPGRSCVALVLLAAAVSCAVAQHAPPWTEDCRKSTYPPSGPTYR
GAVPWYTINLDLPPYKRWHELMLDKAPMLKVIVNSLKNMINTFVPSGKVMQVVDEKLP
GLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRN
MDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGL
FSLTLNERFSINGGYLGILEWILGKKDAMWIGFLTRTVLENSTSYEEAKNLLTKTKIL
APAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRR
TPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKGQFETYLRDCPDPC
IGW"
BASE COUNT 706 a 453 c 479 g 690 t
ORIGIN
1 ctggagtccg gggagtggcg ttggctgcta gagcgatgcc gggccggagt tgcgtcgcct
61 tagtcctcct ggctgccgcc gtcagctgtg ccgtcgcgca gcacgcgccg ccgtggacag
121 aggactgcag aaaatcaacc tatcctcctt caggaccaac gtacagaggt gcagttccat
181 ggtacaccat aaatcttgac ttaccaccct acaaaagatg gcatgaattg atgcttgaca
241 aggcaccaat gctaaaggtt atagtgaatt ctctgaagaa tatgataaat acattcgtgc
301 caagtggaaa agttatgcag gtggtggatg aaaaattgcc tggcctactt ggcaactttc
361 ctggcccttt tgaagaggaa atgaagggta ttgccgctgt tactgatata cctttaggag
421 agattatttc attcaatatt ttttatgaat tatttaccat ttgtacttca atagtagcag
481 aagacaaaaa aggtcatcta atacatggga gaaacatgga ttttggagta tttcttgggt
541 ggaacataaa taatgatacc tgggtcataa ctgagcaact aaaaccttta acagtgaatt
601 tggatttcca aagaaacaac aaaactgtct tcaaggcttc aagctttgct ggctatgtgg
661 gcatgttaac aggattcaaa ccaggactgt tcagtcttac actgaatgaa cgtttcagta
721 taaatggtgg ttatctgggt attctagaat ggattctggg aaagaaagat gccatgtgga
781 tagggttcct cactagaaca gttctggaaa atagcacaag ttatgaagaa gccaagaatt
841 tattgaccaa gaccaagata ttggccccag cctactttat cctgggaggc aaccagtctg
901 gggaaggttg tgtgattaca cgagacagaa aggaatcatt ggatgtatat gaactcgatg
961 ctaagcaggg tagatggtat gtggtacaaa caaattatga ccgttggaaa catcccttct
1021 tccttgatga tcgcagaacg cctgcaaaga tgtgtctgaa ccgcaccagc caagagaata
1081 tctcatttga aaccatgtat gatgtcctgt caacaaaacc tgtcctcaac aagctgaccg
1141 tatacacaac cttgatagat gttaccaaag gtcaattcga aacttacctg cgggactgcc
1201 ctgacccttg tataggttgg tgagcacacg tctggcctac agaatgcggc ctctgagaca
1261 tgaagacacc atctccatgt gaccgaacac tgcagctgtc tgaccttcca aagactaaga
1321 ctcgcggcag gttctctttg agtcaatagc ttgtcttcgt ccatctgttg acaaatgaca
1381 gatctttttt tttcccccta tcagttgatt tttcttattt acagataact tctttagggg
1441 aagtaaaaca gtcatctaga attcactgag ttttgtttca ctttgacatt tggggatctg
1501 gtgggcagtc gaaccatggt gaactccacc tccgtggaat aaatggagat tcagcgtggg
1561 tgttgaatcc agcacgtctg tgtgagtaac gggacagtaa acactccaca ttcttcagtt
1621 tttcacttct acctacatat ttgtatgttt ttctgtataa cagccttttc cttctggttc
1681 taactgctgt taaaattaat atatcattat ctttgctgtt attgacagcg atataatttt
1741 attacatatg attagaggga tgagacagac attcacctgt atatttcttt taatgggcac
1801 aaaatgggcc cttgcctcta aatagcactt tttggggttc aagaagtaat cagtatgcaa
1861 agcaatcttt tatacaataa ttgaagtgtt ccctttttca taattactct acttcccagt
1921 aaccctaagg aagttgctaa cttaaaaaac tgcatcccac gttctgttaa tttagtaaat
1981 aaacaagtca aagacttgtg gaaaatagga agtgaaccca tattttaaat tctcataagt
2041 agcattcatg taataaacag gtttttagtt tgttcttcag attgataggg agttttaaag
2101 aaattttagt agttactaaa attatgttac tgtatttttc agaaatccaa ctgcttatga
2161 aaagtactaa tagaacttgt taacctttct aaccttcacg attaactgtg aaatgtacgt
2221 catttgtgca agaccgtttg tccacttcat tttgtataat cacagttgtg ttcctgacac
2281 tcaataaaca gtcattggaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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