LOCUS BC016182 1099 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD48 molecule, mRNA (cDNA clone MGC:22996
IMAGE:4850933), complete cds.
ACCESSION BC016182
VERSION BC016182.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1099)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1099)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: b Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361570.
FEATURES Location/Qualifiers
source 1..1099
/db_xref="H-InvDB:HIT000037500"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22996 IMAGE:4850933"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1099
/gene="CD48"
/gene_synonym="BLAST"
/gene_synonym="BLAST1"
/gene_synonym="hCD48"
/gene_synonym="mCD48"
/gene_synonym="MEM-102"
/gene_synonym="SLAMF2"
/db_xref="GeneID:962"
/db_xref="HGNC:HGNC:1683"
/db_xref="MIM:109530"
CDS 33..764
/gene="CD48"
/gene_synonym="BLAST"
/gene_synonym="BLAST1"
/gene_synonym="hCD48"
/gene_synonym="mCD48"
/gene_synonym="MEM-102"
/gene_synonym="SLAMF2"
/codon_start=1
/product="CD48 molecule"
/protein_id="AAH16182.1"
/db_xref="GeneID:962"
/db_xref="HGNC:HGNC:1683"
/db_xref="MIM:109530"
/translation="MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLN
ISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKE
DNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGES
VNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLA
RSFGVEWIASWLVVTVPTILGLLLT"
BASE COUNT 333 a 230 c 238 g 298 t
ORIGIN
1 tcctgcgttg ctgggaagtt ctggaaggaa gcatgtgctc cagaggttgg gattcgtgtc
61 tggctctgga attgctactg ctgcctctgt cactcctggt gaccagcatt caaggtcact
121 tggtacatat gaccgtggtc tccggcagca acgtgactct gaacatctct gagagcctgc
181 ctgagaacta caaacaacta acctggtttt atactttcga ccagaagatt gtagaatggg
241 attccagaaa atctaagtac tttgaatcca aatttaaagg cagggtcaga cttgatcctc
301 agagtggcgc actgtacatc tctaaggtcc agaaagagga caacagcacc tacatcatga
361 gggtgttgaa aaagactggg aatgagcaag aatggaagat caagctgcaa gtgcttgacc
421 ctgtacccaa gcctgtcatc aaaattgaga agatagaaga catggatgac aactgttatt
481 tgaaactgtc atgtgtgata cctggcgagt ctgtaaacta cacctggtat ggggacaaaa
541 ggcccttccc aaaggagctc cagaacagtg tgcttgaaac cacccttatg ccacataatt
601 actccaggtg ttatacttgc caagtcagca attctgtgag cagcaagaat ggcacggtct
661 gcctcagtcc accctgtacc ctggcccggt cctttggagt agaatggatt gcaagttggc
721 tagtggtcac ggtgcccacc attcttggcc tgttacttac ctgagatgag ctcttttaac
781 tcaagcgaaa cttcaaggcc agaagatctt gcctgttggt gatcatgctc ctcaccagga
841 cagagactgt ataggctgac cagaagcatg ctgctgaatt atcaacgagg attttcaagt
901 taacttttaa atactggtta ttatttaatt ttatatccct ttgttgtttt ctagtacaca
961 gagatataga gatacacatg cttttttccc acccaaaatt gtgacaacat tatgtgaatg
1021 ttttattatt ttttaaaata aacatttgat ataattatca attaactgaa aaaaaaaaaa
1081 aaaaaaaaaa aaaaaaaaa
//