LOCUS BC016172 1924 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens H2A histone family, member Y2, mRNA (cDNA clone
MGC:16873 IMAGE:3910208), complete cds.
ACCESSION BC016172
VERSION BC016172.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1924)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1924)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC016172.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: g Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923919.
FEATURES Location/Qualifiers
source 1..1924
/db_xref="H-InvDB:HIT000037494"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16873 IMAGE:3910208"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1924
/gene="H2AFY2"
/gene_synonym="macroH2A2"
/db_xref="GeneID:55506"
/db_xref="HGNC:HGNC:14453"
CDS 216..1334
/gene="H2AFY2"
/gene_synonym="macroH2A2"
/codon_start=1
/product="H2A histone family, member Y2"
/protein_id="AAH16172.1"
/db_xref="GeneID:55506"
/db_xref="HGNC:HGNC:14453"
/translation="MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVG
APVYMAAVIEYLAAEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIAS
GGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKS
KPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHP
TTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHC
HIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAI
SAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKLDAK"
BASE COUNT 527 a 489 c 525 g 383 t
ORIGIN
1 cagagaactg ccgcttgccg ccattgacac gcacagatag aacccaaaga aaggcaaaga
61 gtcctgcccg gcaccggcgc cgcgtgggcc aaacctgcgc ccgtggaggg gcgcgcagag
121 ggcaccgggc gccgggagca ggcggcgcag caccagcatt gtgttagtgc cgggaggcca
181 ctgtgtcagc aagctgagag ggaaactgaa gcaagatgtc gggccggagt gggaagaaga
241 aaatgtccaa gctgtcccgt tcagctaggg caggtgtcat ctttccagtg gggaggctga
301 tgcgttatct gaagaaaggg acgttcaagt accggatcag cgtgggcgcc cctgtctaca
361 tggcggcagt cattgagtac ctggcagcgg aaattctaga attggccggc aatgccgcga
421 gggacaacaa gaaggcccgg atagccccga gacacatctt gctggcagtt gccaatgacg
481 aggagctcaa ccagctgcta aaaggagtga ccatcgccag tggaggcgtc ctgcccagaa
541 ttcaccccga actgctggcc aaaaagcgag ggaccaaagg caagtcggaa acgatcctct
601 ccccaccccc agagaaaaga ggcaggaagg ccacgtcagg caagaagggg gggaagaaat
661 ccaaggctgc caaaccacgg acgtccaaaa agtccaaacc aaaggacagc gataaagaag
721 gaacttcaaa ttccacctct gaagatgggc caggggatgg attcaccatt ctgtcttcta
781 agagccttgt tctgggacag aagctgtcct taacccagag tgacatcagc catattggct
841 ccatgagagt ggagggcatt gtccacccaa ccacagccga aattgacctc aaagaagata
901 taggtaaagc cttggaaaag gctgggggaa aagagttctt ggaaacggta aaggagcttc
961 gcaaatccca aggccctttg gaagtcgccg aagccgccgt cagccaatcc agtggactcg
1021 cagccaaatt tgtcatccac tgtcacatcc ctcagtgggg ctccgacaaa tgtgaagaac
1081 agcttgaaga gaccatcaaa aactgcctgt cagcggcgga ggacaagaag ctaaagtccg
1141 tcgcgttccc gcctttcccc agcggcagaa actgctttcc caaacagact gcggcccagg
1201 tgaccctcaa agccatctca gcccactttg atgactcgag cgcgtcctcg ctgaagaacg
1261 tgtacttcct gctcttcgac agcgagagca tcggcatcta cgtgcaggag atggccaagc
1321 tcgacgccaa gtagccgccg cactttccag cagggatcgg aggacgaccc gagtcccaag
1381 agtggggttt tgctttttaa aaggagagag gaggggtgat ggcaggggag tggagggtgg
1441 ccgggcaggt cctgccggcg cagggagccc tctgcccttc acactctcct ccaaaagagc
1501 ctccatctgt aaggaagcag gtctccgcga ggggtttctt tccatgtgtt ttcctcctgt
1561 tgttttagaa cttttttaaa aaaacagacc tcgttttaga tttatagcat tgacttttac
1621 acacattcac acaagaaaaa aatcctttca aaattcttaa atcttctgtt cctccttttt
1681 ccaagggaag agggcaaaaa gtggcctggg ctctgttggt gtgcgtgttc cgtggcggag
1741 agaagaaaat gggaaagaca tctcactggt gcttttctct tttgttttag tgccccccgc
1801 ccccatccct ataatatctg taactactcc taaaaaggtt ttgattcagg cttttttttg
1861 gtttcatttt gtttttttaa gaaaaagaaa atgaaaggaa aaaaaaaaaa aaaaaaaaaa
1921 aaaa
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