LOCUS BC016048 1841 bp mRNA linear HUM 01-JUN-2005
DEFINITION Homo sapiens leucine rich repeat containing 38, mRNA (cDNA clone
IMAGE:4645529), partial cds.
ACCESSION BC016048
VERSION BC016048.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1841)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1841)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: m Column: 15.
FEATURES Location/Qualifiers
source 1..1841
/db_xref="H-InvDB:HIT000088913"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4645529"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1841
/gene="LRRC38"
/db_xref="GeneID:126755"
CDS <1..954
/gene="LRRC38"
/codon_start=1
/product="LRRC38 protein"
/protein_id="AAH16048.1"
/db_xref="GeneID:126755"
/translation="AVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRRGARALQPSAA
ARARARVPRGLRLHRPAHRGLPRRGLPSVPDPFPLDVRKLLVAGNRIQRIPEDFFIFY
GDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLAN
NNLVGVHEDAFETLESLQVLELNDNNLRSLSVAALAALPALRSLRLDGNPWLCDCDFA
HLFSWIQENASKLPKGLDEIQCSLPMESRRISLRELSEASFSECRFSLSLTDLCIIIF
SGVAVSIAAIISSFFLATVVQCLQRCAPNKDAEDEDEDKDD"
BASE COUNT 411 a 559 c 497 g 374 t
ORIGIN
1 gccgtcccgc gccagggctc gctccgagag ccgcttcctt ctcgccgcgg ccggcgcggg
61 ccccccggcc atgcgccccc gagccccagc ctgcgccgcc gcggcgctcg ggctctgcag
121 ccttctgctg ctgctcgcgc ccgggcacgc gtgccccgcg ggctgcgcct gcaccgaccc
181 gcacaccgtg gactgccgcg acgcgggctg cccagcgtgc cagacccttt ccccctggac
241 gtgcgcaagc tgctggtggc cggcaaccgc atccagcgga tccccgagga cttcttcatc
301 ttctacggcg acctggtcta cctggacttc aggaacaact cgctgcgctc gctggaggag
361 ggcacgttca gcggctcggc caagctcgtg ttcctcgacc tcagctacaa caacttgacc
421 cagctgggcg ccggcgcctt ccgctcggcc gggaggctgg tgaagcttag cctggctaac
481 aacaacctgg tgggcgtgca cgaggacgcc ttcgagaccc tggagtcgct gcaggtgctg
541 gagctcaacg acaacaacct gcgcagcctc agcgtggccg ccctggccgc gctgcccgcg
601 ctgcgctccc tgcgtctgga cgggaacccc tggctgtgcg actgtgactt cgcccacctc
661 ttctcctgga tccaggagaa cgcatccaaa ctgcccaaag gccttgatga aatccagtgc
721 tccctgccca tggagagcag gaggatatcc ctgcgtgagc tgtcggaggc cagcttcagc
781 gagtgtaggt tcagcctgtc actcacagac ctctgcatca tcattttctc cggtgtggcc
841 gtgtccattg cggccatcat ctccagcttc ttcctggcca ctgtggtgca gtgcctccag
901 aggtgcgcac ccaacaaaga tgcggaggat gaagacgagg acaaggatga ctgagccacc
961 tcctccctcc tgcctcttac tctccagcac cgaaccagaa gctctctcca agacgagagg
1021 gaaatgctga aaatggaaaa gcactggcca ccatctgtga actgaacaga gcctgttccg
1081 tgtcttggcc cctgggtaca cctgctggga ccactgatct cagagtttag aatcagcaga
1141 gcacagaagc ccaggaagga tggagggaat tattcctgga gcataacctg cctctcagat
1201 cgaggtgtgt gttgggggag aagatgaccg agtcaggctt catagctgat gactaaaagc
1261 ctcccccagg aaatgtgaag actggcagct ttcaatggca aagatgattt tacgccattc
1321 tttttctgac ctgtactggg agatcatgaa acatctgcct tcctcccaag aaacagcagc
1381 tcaaacagtg gagattcaaa ttcggatcat tcaccacaag aacgagaact ttgatcctta
1441 tataataggc ctcagcaacc ttgggatgtt atactgggaa ctaataaact cgtgtgcaat
1501 agactcaatg tttatgttcc cccagatttt atatgttgaa acctaatccc caatgtgatg
1561 gtatttggag gtggggcttt tgggaggtga ttaggtttag atcatatcat gaggatgggg
1621 cccaaatgat gggattagtg ccctcatgaa aggtggcccc agagagctcc ttcacccctt
1681 caatgcttga ggatgcagca agaaatcagc tgcccatgaa ccgagaagca ggccctcacc
1741 agaacccagc catgctggca cccagatctc agacttccag cctccagaac tgggagaaat
1801 aaataaatgt ctgttgtttg taaaaaaaaa aaaaaaaaaa a
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