LOCUS BC015929 2553 bp mRNA linear HUM 02-JAN-2004
DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA
(cDNA clone IMAGE:3912370), partial cds.
ACCESSION BC015929
VERSION BC015929.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2553)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2553)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: j Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922721.
FEATURES Location/Qualifiers
source 1..2553
/db_xref="H-InvDB:HIT000088859"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3912370"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2553
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/db_xref="GeneID:9975"
/db_xref="MIM:602304"
CDS <1..79
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/codon_start=2
/product="NR1D2 protein"
/protein_id="AAH15929.1"
/db_xref="GeneID:9975"
/db_xref="MIM:602304"
/translation="PFWEIISVHTNHIIQGSCHMCGVSY"
BASE COUNT 863 a 335 c 455 g 900 t
ORIGIN
1 gcctttctgg gaaatcattt cagtccacac caaccatatt attcagggtt cctgccatat
61 gtgtggggta tcctactgat acacacgtat tcaaagttta tgggtacaac aaagacatag
121 tacatgtaca taatatgtat gtgaatatag ttaaatatat ttcttcacaa tattttaaac
181 tgtgaagaac tttatcatac aggaaactta aaacaagagg tgtcaaaaga cccaaattag
241 gtgcatttta cttgtttatg atggcataac cattgcttta aaatgtttag acagtagaat
301 attgaattta tgctctattt ttgtttattt aagcaacact taatgtaaaa gtgcaacagg
361 caattgaatc caaatttcaa cgacaaaaaa aaaacatgta ttttagagtt catctttggc
421 aaaatctttg gttcagggta ctagttgttt aaaagttgat tcatattctt accttgtgct
481 gagaaaggtt gcattgctgc cccttataca catgctgcag cttgatgtta aagaattttt
541 attctttctg aagaactaat taatgtttaa agcaactgtt taatatgatg gcatgtgtgt
601 gtgtgcgtgc gtgtgtatgt tctgagtcca cttctttttt cctaaataac actacaggga
661 ttttgtcata ttagatttaa tttataattt gaaaaatcat ctagtgtgtg acctacaggc
721 ttagaaatgg tatagtcaaa gacattttat ccacatttct aatagtggac ttgattaagt
781 agataagatc agcatctgtt tatggtagta ggagaaatag ccaaagttga ggattttatg
841 tatgttttcc tgtttacctg gaaaatagca attaattgga ttttttggta aagattgcct
901 tctgtataat gtttggatta tataaaattg caaaaatgat aacagcccgc tttactgtac
961 taagcctgtt actttcatga cgtgtgagca gaatgcctta ttttgtaatc ttgtttaact
1021 tgttgctact gggacttgat ttactgtggc actagttaag taagttaaaa aaaagttaaa
1081 ccctctcatt attaaagagg aaaggcgatg gtgatgtctg tagtacaata taaaccataa
1141 ttgtgattta ccttaagtag gtataactct tatgggatat acagtatagt ttttgtgaat
1201 ctttacatga tagcattatc tttttataat tttttttcct aagataaaca aatgcatagt
1261 tttcttctat gggtgataga aacagctttt tgaagtaatg aaaacctcaa aagatcatgt
1321 tgattcttaa tttttgcctt ttgcataagc ctctttataa catgtatctt taaaacaatt
1381 aagtctttag gaatgtgtaa ccagaactat gttagtattg cttataaaac tttagttagg
1441 ttcaatatat acatatatac atctctatat aggtatatag atttgcattt tgtcttgtaa
1501 aattttattt gaataaattc ttcctgtagg taatgggaaa caaaattaat agttcatatg
1561 tcactcatag catttctata tttgaaagta gcccaatata aaacttttga ttctaaaatt
1621 aaaccagcag cctattacaa gcacattctt tgattgagtc attggttata aacttactaa
1681 atgcagagaa agcagccaat ttaggaaact tctgagttgg tgggacactg ttgattaata
1741 atgtactgta tgaattaagt gatgctttaa ctttgatttt acattttaaa gttaaaatgt
1801 gggcattatg tcagcaaact taagggcatt atgtcagcaa gctaaaacat tttttttcct
1861 gtgcttttaa tgtatctctt tacatgatct gagagaggat tcaagttgat agaaatagct
1921 gaggggaaaa gggggaacat cttgggatga agcttgtcct tatggtgatg gtttaattac
1981 agattaaaaa attagaagga aatttcagtg gattaagtgt atagctttca tatctacatt
2041 tcaagaaatt accattgtaa cttgataaga gatgatttat tttatgtaaa catctttgca
2101 aagcaaggtg tagcagctca gctagattta ttactgtgca cgaaagtaaa tacctatctc
2161 aattattctt tttcttttcc aatataaagt ttgctgaatg tacaagaaga gtttatcact
2221 taggatatag aattttttta ggggttgggg gaggggatct gttaggaaac tgttacctat
2281 aaacaaagat tgactggatt cgatccaaaa gataaaactt gaagctattc tggaactaac
2341 atggaaaaat gaaatggcta ttgtttaaaa aaatgataga aatacattgt tgatgggata
2401 tgagttaagt ttattttcta caaactgtaa ttgatgagga catggataat atcttcatgt
2461 ttctgagaag taatctgtat gtggggggag gggataataa atatttctac ccccccaaaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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