LOCUS BC015916 2772 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens integrin, beta 7, mRNA (cDNA clone MGC:20174
IMAGE:4644086), complete cds.
ACCESSION BC015916
VERSION BC015916.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2772)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2772)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: l Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504776.
FEATURES Location/Qualifiers
source 1..2772
/db_xref="H-InvDB:HIT000037393"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20174 IMAGE:4644086"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2772
/gene="ITGB7"
/db_xref="GeneID:3695"
/db_xref="MIM:147559"
CDS 72..2468
/gene="ITGB7"
/codon_start=1
/product="ITGB7 protein"
/protein_id="AAH15916.1"
/db_xref="GeneID:3695"
/db_xref="MIM:147559"
/translation="MVALPMVLVLLLVLSRGESELDAKIPSTGDATEWRNPHLSMLGS
CQPAPSCQKCILSHPSCAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQ
QEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDL
SYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPT
RLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIG
WRNVSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVA
QALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSST
VTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLP
EPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLG
RLCECSVAELSSPDLESGCRAPNGTGPLCSGKGHCQCGRCSCSGQSSGHLCECDDASC
ERHEGILCGGFGRCQCGVCHCHANRTGRACECSGDMDSCISPEGGLCSGHGRCKCNRC
QCLDGYYGALCDQCPGCKTPCERHRDCAECGAFRTGPLATNCSTACAHTNVTLALAPI
LDDGWCKERTLDNQLFFFLVEDDARGTVVLRVRPQEKGADHTQAIVLGCVGGIVAVGL
GLVLAYRLSVEIYDRREYSRFEKEQQQLNWKQDSNPLYKSAITTTINPRFQEADSPTL
"
misc_feature 219..1499
/gene="ITGB7"
/note="integrin_B; Region: Integrin, beta chain. Sequences
cut off at repeats due to overlap with EGF"
/db_xref="CDD:pfam00362"
BASE COUNT 621 a 787 c 822 g 542 t
ORIGIN
1 ctaaagccca gagagaaagt ctgacttgcc ccacagccag tgagtgactg cagcagcacc
61 agaatctggg catggtggct ttgccaatgg tccttgtttt gctgctggtc ctgagcagag
121 gtgagagtga attggacgcc aagatcccat ccacagggga tgccacagaa tggcggaatc
181 ctcacctgtc catgctgggg tcctgccagc cagccccctc ctgccagaag tgcatcctct
241 cacaccccag ctgtgcatgg tgcaagcaac tgaacttcac cgcgtcggga gaggcggagg
301 cgcggcgctg cgcccgacga gaggagctgc tggctcgagg ctgcccgctg gaggagctgg
361 aggagccccg cggccagcag gaggtgctgc aggaccagcc gctcagccag ggcgcccgcg
421 gagagggtgc cacccagctg gcgccgcagc gggtccgggt cacgctgcgg cctggggagc
481 cccagcagct ccaggtccgc ttccttcgtg ctgagggata cccggtggac ctgtactacc
541 ttatggacct gagctactcc atgaaggacg acctggaacg cgtgcgccag ctcgggcacg
601 ctctgctggt ccggctgcag gaagtcaccc attctgtgcg cattggtttt ggttcctttg
661 tggacaaaac ggtgctgccc tttgtgagca cagtaccctc caaactgcgc cacccctgcc
721 ccacccggct ggagcgctgc cagtcaccat tcagctttca ccatgtgctg tccctgacgg
781 gggacgcaca agccttcgag cgggaggtgg ggcgccagag tgtgtccggc aatctggact
841 cgcctgaagg tggcttcgat gccattctgc aggctgcact ctgccaggag cagattggct
901 ggagaaatgt gtcccggctg ctggtgttca cttcagacga cacattccat acagctgggg
961 acgggaagtt gggcggcatt ttcatgccca gtgatgggca ctgccacttg gacagcaatg
1021 gcctctacag tcgcagcaca gagtttgact acccttctgt gggtcaggta gcccaggccc
1081 tctctgcagc aaatatccag cccatctttg ctgtcaccag tgccgcactg cctgtctacc
1141 aggagctgag taaactgatt cctaagtctg cagttgggga gctgagtgag gactccagca
1201 acgtggtaca gctcatcatg gatgcttata atagcctgtc ttccaccgtg acccttgaac
1261 actcttcact ccctcctggg gtccacattt cttacgaatc ccagtgtgag ggtcctgaga
1321 agagggaggg taaggctgag gatcgaggac agtgcaacca cgtccgaatc aaccagacgg
1381 tgactttctg ggtttctctc caagccaccc actgcctccc agagccccat ctcctgaggc
1441 tccgggccct tggcttctca gaggagctga ttgtggagtt gcacacgctg tgtgactgta
1501 attgcagtga cacccagccc caggctcccc actgcagtga tggccaggga cacctacaat
1561 gtggtgtatg cagctgtgcc cctggccgcc taggtcggct ctgtgagtgc tctgtggcag
1621 agctgtcctc cccagacctg gaatctgggt gccgggctcc caatggcaca gggcccctgt
1681 gcagtggaaa gggtcactgt caatgtggac gctgcagctg cagtggacag agctctgggc
1741 atctgtgcga gtgtgacgat gccagctgtg agcgacatga gggcatcctc tgcggaggct
1801 ttggtcgctg ccaatgtgga gtatgtcact gtcatgccaa ccgcacgggc agagcatgcg
1861 aatgcagtgg ggacatggac agttgcatca gtcccgaggg agggctctgc agtgggcatg
1921 gacgctgcaa atgcaaccgc tgccagtgct tggacggcta ctatggtgct ctatgcgacc
1981 aatgcccagg ctgcaagaca ccatgcgaga gacaccggga ctgtgcagag tgtggggcct
2041 tcaggactgg cccactggcc accaactgca gtacagcttg tgcccatacc aatgtgaccc
2101 tggccttggc ccctatcttg gatgatggct ggtgcaaaga gcggaccctg gacaaccagc
2161 tgttcttctt cttggtggag gatgacgcca gaggcacggt cgtgctcaga gtgagacccc
2221 aagaaaaggg agcagaccac acgcaggcca ttgtgctggg ctgcgtaggg ggcatcgtgg
2281 cagtggggct ggggctggtc ctggcttacc ggctctcggt ggaaatctat gaccgccggg
2341 aatacagtcg ctttgagaag gagcagcaac aactcaactg gaagcaggac agtaatcctc
2401 tctacaaaag tgccatcacg accaccatca atcctcgctt tcaagaggca gacagtccca
2461 ctctctgaag gagggaggga cacttaccca aggctcttct ccttggagga cagtgggaac
2521 tggagggtga gaggaagggt gggtctgtaa gaccttggta ggggactaat tcactggcga
2581 ggtgcggcca ccaccctact tcattttcag agtgacaccc aagagggctg cttcccatgc
2641 ctgcaacctt gcatccatct gggctacccc acccaagtat acaataaagt cttacctcag
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2761 aaaaaaaaaa aa
//