LOCUS BC015893 3221 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calcium binding and coiled-coil domain 2, mRNA (cDNA
clone MGC:17318 IMAGE:3921397), complete cds.
ACCESSION BC015893
VERSION BC015893.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3221)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3221)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC015893.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: n Column: 13.
FEATURES Location/Qualifiers
source 1..3221
/db_xref="H-InvDB:HIT000037382"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17318 IMAGE:3921397"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3221
/gene="CALCOCO2"
/gene_synonym="MGC17318"
/gene_synonym="NDP52"
/db_xref="GeneID:10241"
/db_xref="HGNC:HGNC:29912"
/db_xref="MIM:604587"
CDS 11..1351
/gene="CALCOCO2"
/gene_synonym="MGC17318"
/gene_synonym="NDP52"
/codon_start=1
/product="calcium binding and coiled-coil domain 2"
/protein_id="AAH15893.1"
/db_xref="GeneID:10241"
/db_xref="HGNC:HGNC:29912"
/db_xref="MIM:604587"
/translation="MEETIKDPPTSAVLLDHCHFSQVIFNSVEKFYIPGGDVTCHYTF
TQHFIPRRKDWIGIFRVGWKTTREYYTFMWVTLPIDLNNKSAKQQEVQFKAYYLPKDD
EYYQFCYVDEDGVVRGASIPFQFRPENEEDILVVTTQGEVEEIEQHNKELCKENQELK
DSCISLQKQNSDMQAELQKKQEELETLQSINKKLELKVKEQKDYWETELLQLKEQNQK
MSSENEKMGIRVDQLQAQLSTQEKEMEKLVQGDQDKTEQLEQLKKENDHLFLSLTEQR
KDQKKLEQTVEQMKQNETTAMKKQQELMDENFDLSKRLSENEIICNALQRQKERLEGE
NDLLKRENSRLLSYMGLDFNSLPYQVPTSDEGGARQNPGLAYGNPYSGIQESSSPSPL
SIKKCPICKADDICDHTLEQQQMQPLCFNCPICDKIFPATEKQIFEDHVFCHSL"
BASE COUNT 1007 a 662 c 692 g 860 t
ORIGIN
1 gacccctacc atggaggaga ccatcaaaga tccccccaca tcagctgtct tgctggatca
61 ctgtcatttc tctcaggtca tctttaacag tgtggagaag ttctacatcc ctggagggga
121 cgtcacatgt cattatacct tcacccagca tttcatccct cgtcgaaagg attggattgg
181 catctttaga gtggggtgga agacaacccg tgagtattac accttcatgt gggttacttt
241 gcccattgac ctaaacaaca aatcagctaa acagcaggaa gtccaattca aagcttacta
301 cctgcccaag gatgatgagt attaccagtt ctgctatgtg gatgaggatg gtgtggtccg
361 gggagcaagt attcctttcc aattccgtcc agaaaatgag gaagacatcc tggttgttac
421 cactcaggga gaggtggaag agattgagca gcacaacaag gagctttgca aagaaaacca
481 ggagctgaag gacagctgta tcagcctcca gaagcagaac tcagacatgc aggctgagct
541 ccaaaagaag caggaggagc tagaaaccct acagagcatc aataagaagt tggaactgaa
601 agtgaaagaa cagaaggact attgggagac agagctgctt caactgaaag aacaaaacca
661 gaagatgtcc tcagaaaatg agaagatggg aatcagagtg gatcagcttc aggcccagct
721 gtcaactcaa gagaaagaaa tggagaagct tgttcaggga gatcaagata agacagagca
781 gttagagcag ctgaaaaagg aaaatgacca cctctttctc agtttaactg aacagaggaa
841 ggaccagaag aagctcgagc agacagtgga gcaaatgaag cagaatgaaa ctactgcaat
901 gaagaaacaa caggaattaa tggatgaaaa ctttgacctg tcaaaaagac tgagtgagaa
961 cgaaattata tgtaatgctc tgcagagaca gaaagagaga ttggaaggag aaaatgatct
1021 tttgaagagg gagaacagca gattgctcag ttacatgggt ctggatttta attctttgcc
1081 gtatcaagta cctacttcag atgaaggagg cgcaagacaa aatccaggac ttgcctatgg
1141 aaacccatat tctggtatcc aagaaagttc ttcccccagc ccgctctcca tcaagaaatg
1201 ccctatctgc aaagcagatg atatttgtga tcacaccttg gagcaacagc agatgcagcc
1261 cctttgtttc aattgtccaa tttgtgacaa gatcttccca gctacagaga agcagatctt
1321 tgaagaccac gtgttctgcc actctctctg agtatcccaa cctcttggat gtatacagag
1381 attttataga atagaaccta tagcttctac catgagttat atgagtcaag atcctgccta
1441 acctgaaatt attagggatt tactcagccc tgctgccgct aacagtggag ttatgtcact
1501 gatctgaagg tcactgttaa gggcttctgc tgccatcctt gtgggttgct acctttaagt
1561 cgcataactc tagctgtatc atcctctcac ctgtcattct tctgagggtc tcagtacaag
1621 ggccctggga tggagccaac ctgggtattc acaacaggcc tgacttgata ctaagtgatt
1681 agttttccaa gttgtcccac tgccattcaa agtcagccct tgagtgtatt tgttctcagt
1741 cctaaccctg gggccagaga ttggtccgag gttgagaatt ccttcctcct catccttggt
1801 gttgctttct ccaaatgatt gttttagact agccaaaaat gccgtggcaa agagctcaga
1861 aatccaattt ggataccaaa ggtttctcat gttaatttct cagcccccaa agaagcatct
1921 tactcctgaa ccttagacag gaagtattgt ttcagtcaca gaaagctttt ctgggtacct
1981 ctggttagca ctttctactc tctgatattt cctatgtaca tagcttttat tgttgtaaat
2041 cctttcttaa tggttaaata ggattgttag caactatggg tttgcagttt tctgagtagg
2101 tgagttttga atatgggtaa atcagaataa tgagacaact tgttaatctc tttaatacta
2161 aaaataaatt actcttctat ttcagggact taggtaattt aaaataaacc ttcaatttat
2221 ggtcttctgt tttgaagctc atgggaaaat tgtgatcaaa agggctatgg gaagggcaga
2281 ccccgccaat gatttctctt cacctgtctt aagattaaat aaaaaagagt gtcctggcag
2341 ttatcttgag gtggggaagg aggtgatgaa acattagttt gtgaaatcca aggccctggc
2401 ttgctttctt tctttttttt tttttttttt ttgaaacagt ctctctctgt cacccaggct
2461 ggcgtgcaat ggcgcagttg actcactaca gcctctgcct cccaggttca agcgattctc
2521 atgccttagc ctcccaagta gctgggatta caggtgtgtg ccgcaatgcc cagctaattt
2581 ttgtgttttt agtagagaca gggtttcact atgttggcca ggctggtctc gaactcctgg
2641 cctcacgtga tctgtccact tcagccgtcc aaagtgctgg gattacaagc gtgagccact
2701 gtgctgggcc cgaggccctg acttcttgct gtaactttcc atgcattttt tttaaaagga
2761 gcagtgtgga ttttcgcacc ctttgtgaac taagttcaat gcgctctatc caaatttgcc
2821 taattgaact ataagaaagt aataattcca ttttctatcc cctcagggac tgaacaaatg
2881 gaaataactc ccaggcagta tcaggtggtc actacagaga cttccacaaa aacttttgaa
2941 tgatgtgaaa cacgatgtca tgaataaggg ttgagccaac tatagctctg tgttcctact
3001 gggctttccc taatgtggtt gggagttatg ccctagacta actgtattgt cctagtcaca
3061 gctccttgct ttgatttcat ccttgataaa atgaagatga aacttaaaaa aaaaaaaaaa
3121 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3181 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//