LOCUS BC015891 1939 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromatin accessibility complex 1, mRNA (cDNA clone
MGC:16846 IMAGE:3908717), complete cds.
ACCESSION BC015891
VERSION BC015891.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1939)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1939)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: d Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24432041.
FEATURES Location/Qualifiers
source 1..1939
/db_xref="H-InvDB:HIT000037381"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16846 IMAGE:3908717"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1939
/gene="CHRAC1"
/gene_synonym="CHARC1"
/gene_synonym="CHARC15"
/gene_synonym="CHRAC15"
/gene_synonym="YCL1"
/db_xref="GeneID:54108"
/db_xref="HGNC:HGNC:13544"
/db_xref="MIM:607268"
CDS 40..435
/gene="CHRAC1"
/gene_synonym="CHARC1"
/gene_synonym="CHARC15"
/gene_synonym="CHRAC15"
/gene_synonym="YCL1"
/codon_start=1
/product="chromatin accessibility complex 1"
/protein_id="AAH15891.1"
/db_xref="GeneID:54108"
/db_xref="HGNC:HGNC:13544"
/db_xref="MIM:607268"
/translation="MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASK
YLKMLKEEKREEDEENDNDNESDHDEADS"
BASE COUNT 574 a 442 c 361 g 562 t
ORIGIN
1 ggcccgccgg ctgcgggcac ccgcgcgacg ggcgggaaga tggcggacgt ggtcgtgggt
61 aaagacaagg gcggggagca gcggctcatc tcgctgcctc tatcccgcat ccgggtcatc
121 atgaagagct cccccgaggt gtccagcatc aaccaggagg cgttggtgct cacggccaag
181 gccacggagc tctttgttca atgcctagcc acctattcct acagacacgg cagtggaaag
241 gaaaagaaag tactgactta cagtgattta gcaaacactg cacagcaatc agaaactttt
301 cagtttcttg cagatatatt accaaagaag attttagcta gtaaatacct gaaaatgctt
361 aaagaggaaa agagggaaga agatgaggag aatgacaatg ataatgaaag tgaccatgat
421 gaagctgact cctaaaccaa aagtgcttta aaaaccagcc tggcgaggac agccctggac
481 ccactccact gtctctaagt aaacacagca ctgcccgctt ttagcgtctt cacttcttca
541 cagagttcca gtgcgtggta ttctttcgag gtattctttc caggccgaga ttgagcacct
601 catgtaccta cgccacagac agccagaggg aaagcgaccc agacagcagc ccctcctcga
661 caggcccacc ctgcagctca ggcaccaaga aaacagccga tactggcagc cattgcagct
721 ccaaactgca gaggcaaggc caattttaac ttttcaattt acagtcgatt ttgaagagct
781 tctacatatc ggttatgtaa attcatatat gtatttttgg aatcagttct tataaacagc
841 tcgattcagt tttagctaaa tttatagttt aggtagtatg ttacatttga atttttgtct
901 taagaaaagt tgactgttca gatatttttc tactgtaaag aaatatactt ttctattaaa
961 gatctgtaca tatttttaca gtaaaatgct ttatggaact agttttagag ccctctatgg
1021 ctttaaggcc ttgcttactg cctgcaaatt ttgagaaatt taaaaataag cattctaaca
1081 cttttattcc cacagaaaaa ttccaagtta aattatcaaa tcaaacacaa aaataagtct
1141 tacctcttgt ataagcatgt tgtactaaaa aaaaattttg aaacattttg tatattggag
1201 atctctctca tcttactgtt ctttgcttta aattcctggc acttcttttt actgtctata
1261 agagaaaacc tatcataagc ccaatttttt ttttccactt agggtaaatg tttggctctt
1321 ctcatttcat tatctttttt ttttttttaa agacagattc tcactcagtt gcccaggctg
1381 gattgcggtg gcgctgtctc agctcactgc aacctccgcc tcccaggttc aagtgattct
1441 cctgcctcat cctcctgagt agctgggatt acaggcgtgt gccaccatgc ccaacctatt
1501 tttgtatttt ttagtagaga cggggttcac catgttggcc aggcttgtct caaactccta
1561 acctcaactg atccacctgc ctcagcctcc caaagtgccg ccgggattac aggcgtgagc
1621 caccatgcct ggccttcatt atctcttttt taaaaatgaa aaagtttata atttacattc
1681 agtaaaatca ccctttttag tgtctagtct gtgaattttg acaaatgcat ggttttgtaa
1741 ccaatcgata ggacagttct gccacccagg acattcccct ctgttcctct gttcctctct
1801 tctcctgccc cctagcaacc actggtgttt tctgtccctc ttgttcattg acatttattt
1861 taaaataaaa tattttaaaa tctaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaa
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