LOCUS BC015766 3360 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens actinin, alpha 1, mRNA (cDNA clone MGC:23191
IMAGE:4856734), complete cds.
ACCESSION BC015766
VERSION BC015766.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3360)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3360)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12025669.
FEATURES Location/Qualifiers
source 1..3360
/db_xref="H-InvDB:HIT000037309"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23191 IMAGE:4856734"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3360
/gene="ACTN1"
/db_xref="GeneID:87"
/db_xref="HGNC:HGNC:163"
/db_xref="MIM:102575"
CDS 118..2796
/gene="ACTN1"
/codon_start=1
/product="actinin, alpha 1"
/protein_id="AAH15766.1"
/db_xref="GeneID:87"
/db_xref="HGNC:HGNC:163"
/db_xref="MIM:102575"
/translation="MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSH
LRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS
KGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAP
YKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDI
PKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLM
EDYEKLASDLLEWIRRTIPWLENRVPENTMHAMQQKLEDFRDYRRLHKPPKVQEKCQL
EINFNTLQTKLRLSNRPAFMPSEGRMVSDINNAWGCLEQVEKGYEEWLLNEIRRLERL
DHLAEKFRQKASIHEAWTDGKEAMLRQKDYETATLSEIKALLKKHEAFESDLAAHQDR
VEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETID
QLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERL
AILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWDHVRQLVPRRDQALTEEHAR
QQHNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLSHLRQYEKSIVNYK
PKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDA
KGISQEQMNEFRASFNHFDRDHSGTLGPEEFKACLISLGYDIGNDPQGEAEFARIMSI
VDPNRLGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITMDELRRELPPDQ
AEYCIARMAPYTGPDSVPGALDYMSFSTALYGESDL"
BASE COUNT 878 a 945 c 909 g 628 t
ORIGIN
1 cccggccccg ccagcccagc ccagcccagc cctactccct ccccacgcca gggcagcagc
61 cgttgctcag agagaaggtg gaggaagaaa tccagaccct agcacgcgcg caccatcatg
121 gaccattatg attctcagca aaccaacgat tacatgcagc cagaagagga ctgggaccgg
181 gacctgctcc tggacccggc ctgggagaag cagcagagaa agacattcac ggcatggtgt
241 aactcccacc tccggaaggc ggggacacag atcgagaaca tcgaagagga cttccgggat
301 ggcctgaagc tcatgctgct gctggaggtc atctcaggtg aacgcttggc caagccagag
361 cgaggcaaga tgagagtgca caagatctcc aacgtcaaca aggccctgga tttcatagcc
421 agcaaaggcg tcaaactggt gtccatcgga gccgaagaaa tcgtggatgg gaatgtgaag
481 atgaccctgg gcatgatctg gaccatcatc ctgcgctttg ccatccagga catctccgtg
541 gaagagactt cagccaagga agggctgctc ctgtggtgtc agagaaagac agccccttac
601 aaaaatgtca acatccagaa cttccacata agctggaagg atggcctcgg cttctgtgct
661 ttgatccacc gacaccggcc cgagctgatt gactacggga agctgcggaa ggatgatcca
721 ctcacaaatc tgaatacggc ttttgacgtg gcagagaagt acctggacat ccccaagatg
781 ctggatgccg aagacatcgt tggaactgcc cgaccggatg agaaagccat catgacttac
841 gtgtctagct tctaccacgc cttctctgga gcccagaagg cggagacagc agccaatcgc
901 atctgcaagg tgttggccgt caaccaggag aacgagcagc ttatggaaga ctacgagaag
961 ctggccagtg atctgttgga gtggatccgc cgcacaatcc cgtggctgga gaaccgggtg
1021 cccgagaaca ccatgcatgc catgcaacag aagctggagg acttccggga ctaccggcgc
1081 ctgcacaagc cgcccaaggt gcaggagaag tgccagctgg agatcaactt caacacgctg
1141 cagaccaagc tgcggctcag caaccggcct gccttcatgc cctctgaggg caggatggtc
1201 tcggacatca acaatgcctg gggctgcctg gagcaggtgg agaagggcta tgaggagtgg
1261 ttgctgaatg agatccggag gctggagcga ctggaccacc tggcagagaa gttccggcag
1321 aaggcctcca tccacgaggc ctggactgac ggcaaagagg ccatgctgcg acagaaggac
1381 tatgagaccg ccaccctctc ggagatcaag gccctgctca agaagcatga ggccttcgag
1441 agtgacctgg ctgcccacca ggaccgtgtg gagcagattg ccgccatcgc acaggagctc
1501 aatgagctgg actattatga ctcacccagt gtcaacgccc gttgccaaaa gatctgtgac
1561 cagtgggaca atctgggggc cctaactcag aagcgaaggg aagctctgga gcggaccgag
1621 aaactgctgg agaccattga ccagctgtac ttggagtatg ccaagcgggc tgcacccttc
1681 aacaactgga tggagggggc catggaggac ctgcaggaca ccttcattgt gcacaccatt
1741 gaggagatcc agggactgac cacagcccat gagcagttca aggccaccct ccctgatgcc
1801 gacaaggagc gcctggccat cctgggcatc cacaatgagg tgtccaagat tgtccagacc
1861 taccacgtca atatggcggg caccaacccc tacacaacca tcacgcctca ggagatcaat
1921 ggcaaatggg accacgtgcg gcagctggtg cctcggaggg accaagctct gacggaggag
1981 catgcccgac agcagcacaa tgagaggcta cgcaagcagt ttggagccca ggccaatgtc
2041 atcgggccct ggatccagac caagatggag gagatcggga ggatctccat tgagatgcat
2101 gggaccctgg aggaccagct cagccacctg cggcagtatg agaagagcat cgtcaactac
2161 aagccaaaga ttgatcagct ggagggcgac caccagctca tccaggaggc gctcatcttc
2221 gacaacaagc acaccaacta caccatggag cacatccgtg tgggctggga gcagctgctc
2281 accaccatcg ccaggaccat caatgaggta gagaaccaga tcctgacccg ggatgccaag
2341 ggcatcagcc aggagcagat gaatgagttc cgggcctcct tcaaccactt tgaccgggat
2401 cactccggca cactgggtcc cgaggagttc aaagcctgcc tcatcagctt gggttatgat
2461 attggcaacg acccccaggg agaagcagaa tttgcccgca tcatgagcat tgtggacccc
2521 aaccgcctgg gggtagtgac attccaggcc ttcattgact tcatgtcccg cgagacagcc
2581 gacacagata cagcagacca agtcatggct tccttcaaga tcctggctgg ggacaagaac
2641 tacattacca tggacgagct gcgccgcgag ctgccacccg accaggctga gtactgcatc
2701 gcgcggatgg ccccctacac cggccccgac tccgtgccag gtgctctgga ctacatgtcc
2761 ttctccacgg cgctgtacgg cgagagtgac ctctaatcca ccccgcccgg ccgccctcgt
2821 cttgtgcgcc gtgccctgcc ttgcacctcc gccgtcgccc atctcctgcc tgggttcggt
2881 ttcagctccc agcctccacc cgggtgagct ggggcccacg tggcatcgat cctccctgcc
2941 cgcgaagtga cagtttacaa aattattttc tgcaaaaaag aaaaaaaagt tacgttaaaa
3001 accaaaaaac tacatatttt attatagaaa aagtattttt tctccaccag acaaatggaa
3061 aaaaagagga aagattaact atttgcaccg aaatgtcttg ttttgttgcg acataggaaa
3121 ataaccaagc acaaagttat attccatcct ttttactgat ttttttttct tctatctgtt
3181 ccatctgctg tattcatttc tccaatctca tgtccatttt ggtgtgggag tcggggtagg
3241 gggtactctt gtcaaaaggc acattggtgc atgtgtgttt gctagctcac ttgtccatga
3301 aaatatttta tgatattaaa gaaaatcttt tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//