LOCUS BC015660 3295 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 1,
mRNA (cDNA clone MGC:23121 IMAGE:4844022), complete cds.
ACCESSION BC015660
VERSION BC015660.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3295)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3295)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015660.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18104977.
FEATURES Location/Qualifiers
source 1..3295
/db_xref="H-InvDB:HIT000037246"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23121 IMAGE:4844022"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3295
/gene="PTPN1"
/db_xref="GeneID:5770"
/db_xref="HGNC:HGNC:9642"
/db_xref="MIM:176885"
CDS 137..1444
/gene="PTPN1"
/codon_start=1
/product="protein tyrosine phosphatase, non-receptor type
1"
/protein_id="AAH15660.1"
/db_xref="GeneID:5770"
/db_xref="HGNC:HGNC:9642"
/db_xref="MIM:176885"
/translation="MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRN
RYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQ
KSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAG
IGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE
GAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPHNGKCREFFPNHQWV
KEETQEDKDCPIKEEKGSPLNAAPYGIESMSQDTEVRSRVVGGSLRGAQAASPAKGEP
SLPEKDEDHALSYWKPFLVNMCVATVLTAGAYLCYRFLFNSNT"
BASE COUNT 845 a 844 c 830 g 776 t
ORIGIN
1 cagcagcggc tagggcggcg gtagctgcag gggtcgggga ttgcagcggg cctcggggct
61 aagagcgcga cgcggcctag agcggcagac ggcgcagtgg gccgagaagg aggcgcagca
121 gccgccctgg cccgtcatgg agatggaaaa ggagttcgag cagatcgaca agtccgggag
181 ctgggcggcc atttaccagg atatccgaca tgaagccagt gacttcccat gtagagtggc
241 caagcttcct aagaacaaaa accgaaatag gtacagagac gtcagtccct ttgaccatag
301 tcggattaaa ctacatcaag aagataatga ctatatcaac gctagtttga taaaaatgga
361 agaagcccaa aggagttaca ttcttaccca gggccctttg cctaacacat gcggtcactt
421 ttgggagatg gtgtgggagc agaaaagcag gggtgtcgtc atgctcaaca gagtgatgga
481 gaaaggttcg ttaaaatgcg cacaatactg gccacaaaaa gaagaaaaag agatgatctt
541 tgaagacaca aatttgaaat taacattgat ctctgaagat atcaagtcat attatacagt
601 gcgacagcta gaattggaaa accttacaac ccaagaaact cgagagatct tacatttcca
661 ctataccaca tggcctgact ttggagtccc tgaatcacca gcctcattct tgaactttct
721 tttcaaagtc cgagagtcag ggtcactcag cccggagcac gggcccgttg tggtgcactg
781 cagtgcaggc atcggcaggt ctggaacctt ctgtctggct gatacctgcc tcttgctgat
841 ggacaagagg aaagaccctt cttccgttga tatcaagaaa gtgctgttag aaatgaggaa
901 gtttcggatg gggctgatcc agacagccga ccagctgcgc ttctcctacc tggctgtgat
961 cgaaggtgcc aaattcatca tgggggactc ttccgtgcag gatcagtgga aggagctttc
1021 ccacgaggac ctggagcccc cacccgagca tatcccccca cctccccggc cacccaaacg
1081 aatcctggag ccacacaatg ggaaatgcag ggagttcttc ccaaatcacc agtgggtgaa
1141 ggaagagacc caggaggata aagactgccc catcaaggaa gaaaaaggaa gccccttaaa
1201 tgccgcaccc tacggcatcg aaagcatgag tcaagacact gaagttagaa gtcgggtcgt
1261 ggggggaagt cttcgaggtg cccaggctgc ctccccagcc aaaggggagc cgtcactgcc
1321 cgagaaggac gaggaccatg cactgagtta ctggaagccc ttcctggtca acatgtgcgt
1381 ggctacggtc ctcacggccg gcgcttacct ctgctacagg ttcctgttca acagcaacac
1441 atagcctgac cctcctccac tccacctcca cccactgtcc gcctctgccc gcagagccca
1501 cgcccgacta gcaggcatgc cgcggtaggt aagggccgcc ggaccgcgta gagagccggg
1561 ccccggacgg acgttggttc tgcactaaaa cccatcttcc ccggatgtgt gtctcacccc
1621 tcatcctttt actttttgcc ccttccactt tgagtaccaa atccacaagc cattttttga
1681 ggagagtgaa agagagtacc atgctggcgg cgcagaggga aggggcctac acccgtcttg
1741 gggctcgccc cacccagggc tccctcctgg agcatcccag gcgggcggca cgccaacagc
1801 cccccccttg aatctgcagg gagcaactct ccactccata tttatttaaa caattttttc
1861 cccaaaggca tccatagtgc actagcattt tcttgaacca ataatgtatt aaaatttttt
1921 gatgtcagcc ttgcatcaag ggctttatca aaaagtacaa taataaatcc tcaggtagta
1981 ctgggaatgg aaggctttgc catgggcctg ctgcgtcaga ccagtactgg gaaggaggac
2041 ggttgtaagc agttgttatt tagtgatatt gtgggtaacg tgagaagata gaacaatgct
2101 ataatatata atgaacacgt gggtatttaa taagaaacat gatgtgagat tactttgtcc
2161 cgcttattct cctccctgtt atctgctaga tctagttctc aatcactgct cccccgtgtg
2221 tattagaatg catgtaaggt cttcttgtgt cctgatgaaa aatatgtgct tgaaatgaga
2281 aactttgatc tctgcttact aatgtgcccc atgtccaagt ccaacctgcc tgtgcatgac
2341 ctgatcatta catggctgtg gttcctaagc ctgttgctga agtcattgtc gctcagcaat
2401 agggtgcagt tttccaggaa taggcatttg cctaattcct ggcatgacac tctagtgact
2461 tcctggtgag gcccagcctg tcctggtaca gcagggtctt gctgtaactc agacattcca
2521 agggtatggg aagccatatt cacacctcac gctctggaca tgatttaggg aagcagggac
2581 accccccgcc ccccaccttt gggatcagcc tccgccattc caagtcaaca ctcttcttga
2641 gcagaccgtg atttggaaga gaggcacctg ctggaaacca cacttcttga aacagcctgg
2701 gtgacggtcc tttaggcagc ctgccgccgt ctctgtcccg gttcaccttg ccgagagagg
2761 cgcgtctgcc ccaccctcaa accctgtggg gcctgatggt gctcacgact cttcctgcaa
2821 agggaactga agacctccac attaagtggc tttttaacat gaaaaacacg gcagctgtag
2881 ctcccgagct actctcttgc cagcattttc acattttgcc tttctcgtgg tagaagccag
2941 tacagagaaa ttctgtggtg ggaacattcg aggtgtcacc ctgcagagct atggtgaggt
3001 gtggataagg cttaggtgcc aggctgtaag cattctgagc tgggcttgtt gtttttaagt
3061 cctgtatatg tatgtagtag tttgggtgtg tatatatagt agcatttcaa aatggacgta
3121 ctggtttaac ctcctatcct tggagagcag ctggctctcc accttgttac acattatgtt
3181 agagaggtag cgagctgctc tgctatatgc cttaagccaa tatttactca tcaggtcatt
3241 attttttaca atggccatgg aataaaccat ttttacaaaa aaaaaaaaaa aaaaa
//