LOCUS BC015580 2159 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens heterogeneous nuclear ribonucleoprotein F, mRNA (cDNA
clone MGC:23274 IMAGE:4636807), complete cds.
ACCESSION BC015580
VERSION BC015580.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2159)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2159)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015580.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: c Column: 11.
FEATURES Location/Qualifiers
source 1..2159
/db_xref="H-InvDB:HIT000037199"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23274 IMAGE:4636807"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2159
/gene="HNRPF"
/gene_synonym="HNRNPF"
/gene_synonym="mcs94-1"
/db_xref="GeneID:3185"
/db_xref="MIM:601037"
CDS 281..1528
/gene="HNRPF"
/gene_synonym="HNRNPF"
/gene_synonym="mcs94-1"
/codon_start=1
/product="HNRPF protein"
/protein_id="AAH15580.1"
/db_xref="GeneID:3185"
/db_xref="MIM:601037"
/translation="MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH
FIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGP
NSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFA
SQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARR
YIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRY
GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVE
FATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGL
ESQSVSGCYGAGYSGQNSMGGYD"
misc_feature 617..829
/gene="HNRPF"
/gene_synonym="HNRNPF"
/gene_synonym="mcs94-1"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 1148..1357
/gene="HNRPF"
/gene_synonym="HNRNPF"
/gene_synonym="mcs94-1"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 577 a 463 c 563 g 556 t
ORIGIN
1 cgtggaagca ggactgcgcc gcgtcttcct caaggttgag aacaaaaaca tgcacctgga
61 gtttccccgg agccctctgc gtggttgagc ttcggtggaa tttcggggct cttggctgcc
121 agccgcgctt gcctggtagc aacagaaacc agtcctgctc gcctccgtgg acatttcatt
181 accatccaga agtgtctccc actgaaggca tccgtggttg tttttaagcc acaaaaaagc
241 cacacccaag atcacctgac acccaccctg tcaagtgtcc atgatgctgg gccctgaggg
301 aggtgaaggc tttgtggtca agctccgtgg cctgccctgg tcctgctctg ttgaggacgt
361 gcagaacttc ctctctgact gcacgattca tgatggggcc gcaggtgtcc atttcatcta
421 cactagagag ggcaggcaga gtggtgaggc ttttgttgaa cttggatcag aagatgatgt
481 aaaaatggcc ctgaaaaaag acagggaaag catgggacac cggtacattg aggtgttcaa
541 gtcccacaga accgagatgg attgggtgtt gaagcacagt ggtcccaaca gtgccgacag
601 cgccaacgat ggcttcgtgc ggcttcgagg actcccattt ggatgcacaa aggaagaaat
661 tgttcagttc ttctcagggt tggaaattgt gccaaacggg atcacattgc ctgtggaccc
721 cgaaggcaag attacagggg aagcgttcgt gcagtttgcc tcgcaggagt tagctgagaa
781 ggctctaggg aaacacaagg agaggatagg gcacaggtac attgaggtgt ttaagagcag
841 ccaggaggaa gttaggtcat actcagatcc ccctctgaag ttcatgtccg tgcagcggcc
901 agggccctat gaccggcccg ggactgccag gaggtacatt ggcatcgtga agcaggcagg
961 cctggaaagg atgaggcctg gtgcctacag cacaggctac gggggctacg aggagtacag
1021 tggcctcagt gatggctacg gcttcaccac cgacctgttc gggagagacc tcagctactg
1081 tctctccgga atgtatgacc acagatacgg cgacagtgag ttcacagtgc agagcaccac
1141 aggccactgt gtccacatga ggggcctgcc gtacaaagcg accgagaacg acatttacaa
1201 cttcttctct cctctcaacc ctgtgagagt ccatattgag attggcccag atggaagagt
1261 gacgggtgaa gcagatgttg agtttgctac tcatgaagaa gctgtggcag ctatgtccaa
1321 agacagggcc aatatgcagc acagatatat agaactcttc ttgaattcaa caacaggggc
1381 cagcaatggg gcgtatagca gccaggtgat gcaaggcatg ggggtgtctg ctgcccaggc
1441 cacttacagt ggcctggaga gccagtcagt gagtggctgt tacggggccg gctacagtgg
1501 gcagaacagc atgggtggct atgactagtt ttgttaggaa catttgagtt acttcaatca
1561 ttttcacagg cagccaacaa gcaattaaga gcagttataa tagaggaagc tgggggaccc
1621 attttgcacc atgagtttgt gaaaaatctg gattaaaaaa ttacctcttc agtgttttct
1681 catgcaaaat tttcttctag catgtgataa tgagtaaact aaaactattt tcagcttttc
1741 tcaattaaca ttttggtagt atacttcaga gtgatgttat ctaagtttaa gtagtttaag
1801 tatgttaaat gtggatcttt tacaccacat cacagtgaac acactgggga gacgtgcttt
1861 tttggaaaac tcaaaggtgc tagctccctg attcaaagaa atatttctca tgtttgttca
1921 ttctagttta tattttcatt taaaatcctt taggttaagt ttaagctttt taaaagttag
1981 ttttgagaat tgagacacaa tactaatact gtaggaattg gtgaggcctt gacttaaaac
2041 tttctttgta ctgtgatttc cttttgggtg tattttgcta agtgaaactt gttaaatttt
2101 ttgttaacta aatttttttc ttaaaataaa gactttttca caaaaaaaaa aaaaaaaaa
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