LOCUS BC015568 1699 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:22981 IMAGE:3356401), complete cds.
ACCESSION BC015568
VERSION BC015568.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1699)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1699)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015568.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705786.
FEATURES Location/Qualifiers
source 1..1699
/db_xref="H-InvDB:HIT000037190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22981 IMAGE:3356401"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1699
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 159..956
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH15568.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSLRSIQRSLLCRRQEDSRVMVYSALRIPPED"
BASE COUNT 302 a 448 c 471 g 478 t
ORIGIN
1 cggttccccc ccttcccctt ccccggggtc tgggggtgac attgcaccgc gcccctcgtg
61 gggtcgcgtt gccaccccac gcggactccc cagctggcgc gcccctccca tttgcctgtc
121 ctggtcaggc ccccaccccc cttcccacct gaccagccat gggggctgcg gtgtttttcg
181 gctgcacttt cgtcgcgttc ggcccggcct tcgcgctttt cttgatcact gtggctgggg
241 acccgcttcg cgttatcatc ctggtcgcag gggcattttt ctggctggtc tccctgctcc
301 tggcctctgt ggtctggttc atcttggtcc atgtgaccga ccggtcagat gcccggctcc
361 agtacggcct cctgattttt ggtgctgctg tctctgtcct tctacaggag gtgttccgct
421 ttgcctacta caagctgctt aagaaggcag atgaggggtt agcatcgctg agtgaggacg
481 gaagatcacc catctccatc cgccagatgg cctatgtttc tggtctctcc ttcggtatca
541 tcagtggtgt cttctctgtt atcaatattt tggctgatgc acttgggcca ggtgtggttg
601 ggatccatgg agactcaccc tattacttcc tgacttcagc ctttctgaca gcagccatta
661 tcctgctcca taccttttgg ggagttgtgt tctttgatgc ctgtgagagg agacggtact
721 gggctttggg cctggtggtt gggagtcacc tactgacatc gggactgaca ttcctgaacc
781 cctggtatga ggccagcctg ctgcccatct atgcagtcac tgtttccatg gggctctggg
841 ccttcatcac agctggaggg tccctccgaa gtattcagcg cagcctcttg tgccgacggc
901 aggaggacag tcgggtgatg gtgtattctg ccctgcgcat cccacccgag gactgaggga
961 acctaggggg gacccctggg cctggggtgc cctcctgatg tcctcgccct gtatttctcc
1021 atctccagtt ctggacagtg caggttgcca agaaaaggga cctagtttag ccattgccct
1081 ggagatgaaa ttaatggagg ctcaaggata gatgagctct gagtttctca gtactccctc
1141 aagactggac atcttggtct ttttctcagg cctgaggggg aaccattttt ggtgtgataa
1201 ataccctaaa ctgccttttt ttcttttttg aggtgggggg agggaggagg tatattggaa
1261 ctcttctaac ctccttgggc tatattttct ctcctcgagt tgctcctcat ggctgggctc
1321 atttcggtcc ctttctcctt ggtcccagac cttgggggaa aggaaggaag tgcatgtttg
1381 ggaactggca ttactggaac taatggtttt aacctcctta accaccagca tccctcctct
1441 ccccaaggtg aagtggaggg tgctgtggtg agctggccac tccagagctg cagtgccact
1501 ggaggagtca gactaccatg acatcgtagg gaaggagggg agattttttt gtagttttta
1561 attggggtgt gggaggggcg gggaggtttt ctataaactg tatcattttc tgctgagggt
1621 ggagtgtccc atccttttaa tcaaggtgat tgtgattttg actaataaaa aagaatttgt
1681 aaaaaaaaaa aaaaaaaaa
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