LOCUS BC015477 1446 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens helicase, lymphoid-specific, mRNA (cDNA clone
IMAGE:3913594), partial cds.
ACCESSION BC015477
VERSION BC015477.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1446)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1446)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: l Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21914926.
FEATURES Location/Qualifiers
source 1..1446
/db_xref="H-InvDB:HIT000088707"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3913594"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1446
/gene="HELLS"
/gene_synonym="FLJ10339"
/gene_synonym="LSH"
/gene_synonym="PASG"
/gene_synonym="SMARCA6"
/db_xref="GeneID:3070"
/db_xref="MIM:603946"
CDS <1..955
/gene="HELLS"
/gene_synonym="FLJ10339"
/gene_synonym="LSH"
/gene_synonym="PASG"
/gene_synonym="SMARCA6"
/codon_start=2
/product="HELLS protein"
/protein_id="AAH15477.1"
/db_xref="GeneID:3070"
/db_xref="MIM:603946"
/translation="DDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMM
LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ
MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGI
NLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK
RKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDL
ELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPECLF"
misc_feature 110..679
/gene="HELLS"
/gene_synonym="FLJ10339"
/gene_synonym="LSH"
/gene_synonym="PASG"
/gene_synonym="SMARCA6"
/note="HepA; Region: Superfamily II DNA/RNA helicases,
SNF2 family [Transcription / DNA replication,
recombination, and repair]"
/db_xref="CDD:COG0553"
BASE COUNT 471 a 216 c 300 g 459 t
ORIGIN
1 agatgatttc cctaatgaat tggaaaaact gatcagtcaa atacagccag aggtggaccg
61 agaaagagct gttgtggaag tgaatatccc tgtagaatct gaagttaatc tgaagctgca
121 gaatataatg atgctacttc gtaaatgttg taatcatcca tatttgattg aatatcctat
181 agaccctgtt acacaagaat ttaagatcga tgaagaattg gtaacaaatt ctgggaagtt
241 cttgattttg gatcgaatgc tgccagaact aaaaaaaaga ggtcacaagg tgctgctttt
301 ttcacaaatg acaagcatgt tggacatttt gatggattac tgccatctca gagatttcaa
361 cttcagcagg cttgatgggt ccatgtctta ctcagagaga gaaaaaaaca tgcacagctt
421 caacacggat ccagaggtgt ttatcttctt agtgagtaca cgagctggtg gcctgggcat
481 taatctgact gcagcagata cagttatcat ttatgatagt gattggaacc cccagtcgga
541 tcttcaggcc caggatagat gtcatagaat tggtcagaca aagccagttg ttgtttatcg
601 ccttgttaca gcaaatacta tcgatcagaa aattgtggaa agagcagctg ctaaaaggaa
661 actggaaaag ttgatcatcc ataaaaatca tttcaaaggt ggtcagtctg gattaaatct
721 gtctaagaat ttcttagatc ctaaggaatt aatggaatta ttaaaatcta gagattatga
781 aagggaaata aaaggatcaa gagagaaggt cattagtgat aaagatctag agttgttgtt
841 agatcgaagt gatcttattg atcaaatgaa tgcttcagga ccaattaaag agaagatggg
901 gatattcaag atattagaaa attctgaaga ttccagtcct gaatgtttgt tttaaagtgg
961 agctcaagaa tagcttttaa aagttcttat ttacatctag tgatttccct gtattgggtt
1021 tgaaatactg attgtccact tcaccttttt tattatatca gttgacatgt aactagtacc
1081 atgcgtactt aaatagatgg taattttctg agccttacca agaacaaaga agtatccata
1141 ttaagtttag attttcagtt aatttttgag actgagtagt attcttggat acaggctgat
1201 gtgtacttaa ccacttccag atttatacag tcttcctgtg gaagtttagt aaatgtcttt
1261 ttccctcctt tcttctagta atgcagttca tgggctttag gtacttcagt tatgaagtag
1321 gcttttcatg gggagagatt gggattatgc tctctgttgt ttaagaaact gtttgatttt
1381 agagtctatt tctatgagat agtttaccaa ataaatgttc cttataagat gaaaaaaaaa
1441 aaaaaa
//