LOCUS BC015325 1050 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens gypsy retrotransposon integrase 1, mRNA (cDNA clone
IMAGE:4414731), complete cds.
ACCESSION BC015325
VERSION BC015325.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1050)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1050)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923123
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1050
/db_xref="H-InvDB:HIT000037077"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4414731"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1050
/gene="GIN1"
/gene_synonym="GIN-1"
/gene_synonym="TGIN1"
/db_xref="GeneID:54826"
/db_xref="HGNC:HGNC:25959"
CDS 42..710
/gene="GIN1"
/gene_synonym="GIN-1"
/gene_synonym="TGIN1"
/codon_start=1
/product="GIN1 protein"
/protein_id="AAH15325.1"
/db_xref="GeneID:54826"
/db_xref="HGNC:HGNC:25959"
/translation="MVRSGKNGDLHLKQIAYYKRTCEYHSTTLPSERSGIRRAAKKFV
FKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWT
SVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVY
AIIMTDLFTKWIVILPLCDVSASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQKVFIS
CKVQ"
BASE COUNT 376 a 167 c 196 g 311 t
ORIGIN
1 cttaaatctg tcgtttgaat ttaggaccac ctcggttcac aatggtccgt agtggaaaaa
61 atggtgacct tcatcttaaa cagattgcat attacaaacg aacttgtgaa tatcattcaa
121 ctacactgcc aagtgagaga agtggcataa gaagagcagc aaaaaaattt gtcttcaaag
181 aaaaaaagct gttttatgtt ggaaaagaca gaaaacaaaa tcgtttggta attgtttcag
241 aagaggaaaa aaagaaagtc ttaagagaat gccatgaaaa tgacagtgga gctcatcatg
301 gtatatccag gaccctcact ctggtagaat ccaattatta ttggacatct gtgaccaatg
361 atgtcaaaca gtgggtatat gcttgtcagc attgccaagt ggcaaaaaat acagttattg
421 tagcaccgaa acagcacctt ctcaaggtgg aaaatccatg gagtttagtt actgttgatc
481 tgatggggcc ttttcataca agcaacagaa gtcatgtata tgctataatc atgacagatt
541 tattcaccaa atggattgtg attttgcctc tatgtgatgt ttcagcatca gaagtttcta
601 aagctattat caatatattt ttcttatatg gacctcctca gaaaataata atggaccaaa
661 gagatgaatt cattcaacag aaagtcttta tctcttgcaa ggttcagtag tggcagatca
721 tgactacatt ggattgcctg aaattccgat tggagcatat caagcaaata ttctggtgga
781 agatgcaact attggtatag tcgataatga attactgaca tcaagcaagg atcgtgaact
841 attagaatat agaaatacga aaatctctcc attgatagac gatcatagtt ctcttgaaaa
901 gcagactttc agtctgttgg actcttcaaa ccaggttctt gaatacttaa gttagtaaat
961 accaaaattt atttaaagtg cttgtttaga atataaattc ttaatgatat cttattcatt
1021 aaaaacgttg tatagaaaaa aaaaaaaaaa
//