LOCUS BC015179 1242 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 3, mRNA (cDNA clone MGC:10153
IMAGE:3905515), complete cds.
ACCESSION BC015179
VERSION BC015179.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1242)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1242)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111040.
FEATURES Location/Qualifiers
source 1..1242
/db_xref="H-InvDB:HIT000037037"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10153 IMAGE:3905515"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1242
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
CDS 104..592
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/codon_start=1
/product="sorting nexin 3"
/protein_id="AAH15179.1"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
/translation="MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRG
RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLP
FRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR
HA"
BASE COUNT 368 a 260 c 273 g 341 t
ORIGIN
1 cgcgcgagcc ccgtgtcccc acggcgggca gcagcggcgg cggcggcggc tgaacgcgga
61 gggggcggag ggagcccgcg gcggcggcag cagctacagc gaaatggcgg agaccgtggc
121 tgacacccgg cggctgatca ccaagccgca gaacctgaat gacgcctacg gaccccccag
181 caacttcctc gagatcgatg tgagcaaccc gcaaacggtg ggggtcggcc ggggccgctt
241 caccacttac gaaatcaggg tcaagacaaa tcttcctatt ttcaagctga aagaatctac
301 tgttagaaga agatacagtg actttgaatg gctgcgaagt gaattagaaa gagagagcaa
361 ggtcgtagtt cccccgctcc ctgggaaagc gtttttgcgt cagcttcctt ttagaggaga
421 tgatggaata tttgatgaca attttattga ggaaagaaaa caagggctgg agcagtttat
481 aaacaaggtc gctggtcatc ctctggcaca gaacgaacgt tgtcttcaca tgtttttaca
541 agatgaaata atagataaaa gctatactcc atctaaaata agacatgcct gaaatttggc
601 aagaaggggc aaaaacgtga ctattaatga ttgataagca ccagtgaaga agttctaact
661 tttagcatgc tgcacagaaa ctggtataac atgccttcag tatactaaca ctcatatgct
721 cagttttgtt ttgttttggc agttgacaag aagttaattt gctttagtaa aaatccctca
781 ttccagcctt tctatataaa tagctctttc ttgctgtttt aatgtggtgc acactatagc
841 ctcacaaacc tgttattcca gtgtaatctg cagtgtcgta actaaagtta ctggcttggt
901 cttatttgca cagtttttgc gtcttgtttg cttcttgcat ctgattaact agaatatttc
961 tctttccccc ttttaatttg tgatgtcact tgaccccatt tatgtgtagg agcactacac
1021 cattggtttc caatactgca cacataagat acatacttgt gtgcagaaag tatcttcctc
1081 caggcttgta atacccttca catggaagat taatgaggga aatctttata ttctgtataa
1141 aaacaaaagc aaatttatat actaaaatca tttgtctaaa aatttaagtt gttttcaaat
1201 aaaaattaaa atgcatttct gatatgcaaa aaaaaaaaaa aa
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