LOCUS BC015016 3349 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens ATG2 autophagy related 2 homolog B (S. cerevisiae),
mRNA (cDNA clone IMAGE:3920437), partial cds.
ACCESSION BC015016
VERSION BC015016.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3349)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3349)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC015016.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: m Column: 4.
FEATURES Location/Qualifiers
source 1..3349
/db_xref="H-InvDB:HIT000036962"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3920437"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3349
/gene="ATG2B"
/db_xref="GeneID:55102"
/db_xref="HGNC:HGNC:20187"
CDS <1..2330
/gene="ATG2B"
/codon_start=3
/product="ATG2B protein"
/protein_id="AAH15016.3"
/db_xref="GeneID:55102"
/db_xref="HGNC:HGNC:20187"
/translation="RDYVRVMDMGLLELTITAVKSDSDGEQTEPRFELHCSSDVVHIR
TCSDSCAALMNLIQYIASYGDLQTPNKADMKPGAFQRRSKVDSSGRSSSRGPVLPEAD
QQMLRDLMSDAMEEIDMQQGTSSVKPQANGVLDEKSQIQEPCCSDLFLFPDESGNVSQ
ESGPTYASFSHHFISDAMTGVPTENDDFCILFAPKAAMQEKEEEPVIKIMVDDAIVIR
DNYFSLPVNKTDTSKAPLHFPIPVIRYVVKEVSLVWHLYGGKDFGTVPPTSPAKSYIS
PHSSPSHTPTRHGRNTVCGGKGRNHDFLMEIQLSKVKFQHEVYPPCKPDCDSSLSEHP
VSRQVFIVQDLEIRDRLATSQMNKFLYLYCSKEMPRKAHSNMLTVKALHVCPESGRSP
QECCLRVSLMPLRLNIDQDALFFLKDFFTSLSAEVELQMTPDPEVKKSPGADVTCSLP
RHLSTSKEPNLVISFSGPKQPSQNDSANSVEVVNGMEEKNFSAEEASFRDQPVFFREF
RFTSEVPIRLDYHGKHVSMDQGTLAGILIGLAQLNCSELKLKRLSYRHGLLGVDKLFS
YAITEWLNDIKKNQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQR
GAASFGTSTAMAALELTNRMVQTIQAAAETAYDMVSPGTLSIEPKKTKRFPHHRLAHQ
PVDLREGVAKAYSVVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVKPL
IVATEATSNVLGGMRNQIRPDVRQDESQKWRHGDD"
BASE COUNT 973 a 663 c 776 g 937 t
ORIGIN
1 gtagagatta tgttcgtgtg atggatatgg ggcttttgga gttaaccata actgcagtga
61 agtctgattc tgatggagag caaactgagc cccgctttga gttacactgt tccagcgatg
121 ttgtccatat cagaacgtgc tcagactctt gtgctgcgtt aatgaatctc attcagtaca
181 ttgcaagcta tggtgacttg cagacaccta acaaggcaga tatgaagcct ggagcctttc
241 aaagaaggtc taaggtagat tccagtggtc gatcatcctc acgtggtcca gtacttcctg
301 aagcagatca acaaatgtta cgagatctga tgagtgatgc tatggaggag atcgacatgc
361 aacaaggcac ctcgtcagta aaaccacagg ctaatggtgt tttggatgaa aaatctcaaa
421 ttcaggagcc atgttgttca gacctcttcc tgtttcctga cgagagtggg aatgtatccc
481 aggagtccgg ccccacctat gcctcattct ctcaccattt catcagtgat gcaatgacag
541 gtgtgcccac tgagaatgat gacttttgca ttctttttgc accaaaagca gccatgcagg
601 agaaggaaga agaaccagtt ataaaaatca tggttgatga tgcaattgtg ataagagaca
661 attatttcag tctgcccgtt aataagaccg atacgagcaa agccccctta cactttccca
721 ttcctgtgat tcgctatgtg gtgaaggagg tctctcttgt ctggcatctt tatggaggaa
781 aggattttgg aacagtccct cccacttctc cggctaaaag ttatattagt ccccacagtt
841 cgccttctca cacacccacg agacatggac gtaatacagt atgtggggga aaaggaagga
901 accatgactt tttaatggaa atacagctaa gcaaggtgaa gtttcagcat gaagtctacc
961 cgccatgcaa acctgattgt gattccagcc tctcagaaca cccagtctcc cggcaggtgt
1021 tcattgttca ggatcttgag attcgagatc gtttggcaac atcacaaatg aataaatttt
1081 tatacctgta ttgcagtaaa gaaatgcctc gaaaagctca ctccaacatg ttgacagtga
1141 aagccttaca cgtgtgtcca gaatctggca ggtccccaca ggagtgctgc ttgagagtgt
1201 cgctgatgcc gctccgcctc aatattgacc aggatgcttt gttcttcctg aaggatttct
1261 tcacaagtct ttctgcagaa gtagagcttc aaatgactcc agatccagaa gttaaaaagt
1321 ctcctggagc tgatgtcacc tgcagtttgc caaggcattt gagtacctca aaggagccaa
1381 atctggttat ttctttctct gggccaaaac agccttccca aaatgatagt gccaattcag
1441 tggaagtggt taatggcatg gaagagaaga acttctctgc tgaagaagca tcttttaggg
1501 atcagcctgt gttttttaga gaatttagat tcacgtcaga agttcccatt cgacttgatt
1561 atcatggcaa acatgtatca atggatcagg gtacgctagc tgggattttg attggtctgg
1621 ctcagttaaa ctgctctgaa ctaaagctca agaggctttc ctatcgacat ggtttactag
1681 gcgttgacaa attattctca tatgcaatca ctgagtggct taatgacatt aagaagaacc
1741 agctaccagg aatcctggga ggtgttggac ctatgcattc actagtacaa ttagtacaag
1801 gcctaaagga cttggtctgg ctcccaatag agcagtaccg gaaggatggc cgcattgtca
1861 gagggtttca gagaggcgct gcttcctttg gtacctcgac agcgatggct gctctagaac
1921 tcacaaacag aatggttcaa accatacagg cagctgcaga gactgcttat gatatggtgt
1981 ctcctggtac cctttctatc gagcccaaga agaccaaaag gtttcctcat caccggttag
2041 cccaccagcc agtagacctg agggaaggtg tggccaaggc ctacagtgtt gtgaaagagg
2101 gaatcacaga cacggctcag accatttatg aaactgcggc tcgagaacac gagagcagag
2161 gggtgactgg tgccgtgggc gaggttctgc gccagattcc tccggcagtg gtgaaacctc
2221 tgattgttgc cacagaagca acgtcaaacg tgctgggtgg catgagaaac caaattaggc
2281 cagatgtccg gcaagacgag tcacagaaat ggcgccacgg ggatgactga tggcttggaa
2341 ctgacagtgt gaagataagg agagtggaac caggagctca gagtcctgac agcagcttca
2401 gaggaagctc gtttaatttt attgtgctca tctcaggaac aaaagcattt tttagttaaa
2461 taatttaaca tcaaaacaac atgcaaccaa aaacttctga catttatagt tgatacttgc
2521 ctatagaaat gtttggtggc tggtgtcaaa ggtccttaaa gcatttgctg ccaagttagt
2581 ggaaggctca cttttgttaa gatgactgta attctccttg ttaccgacga gagatcattg
2641 gaagctgcct tctaacactt tgtgtagctc tgtggagttg gattttctta aggtttaaaa
2701 agaatcacag cttcggaact tttaactgaa aatgagagac agaagccaca ggggaagcaa
2761 agcaaatagg attttcaata taaatatcag tgtggaaaaa taacctattc tgttgaattt
2821 agtgttcatg catttgagaa caacattatt tccatttact ccgaaaatcc ttctgtgggg
2881 gtttgagaaa gtgaatgttg cagacatgtt ctgttgtgtt gcactttatc ctgtgtttat
2941 gtgtatgtgt ttttagatta attcaagttg tgtgctatat ttcttgtata atttacaaag
3001 ttacacaaaa tataaagagc agtaaacttg tctgaaagtt tttggcaaag gaaggtaact
3061 tcaatgtaat agcttccttt aagagtacag gaaaatgcat tctgtaatga agtggggccc
3121 atgtaattgt ttatattttc agttttaagc aggtatagtg caggcttgtt aggaatgtgt
3181 ggaagggaag attggaagtg atttttcctc ttttaaaagt aaacaaaatt cttcaaatat
3241 gccctagtta actatttcag cataccattt ttacttggtt aacagtgtac attttgataa
3301 cctatcagga atgaataaag tatttttatt taaaaaaaaa aaaaaaaaa
//