LOCUS BC014984 2594 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear RNA activating complex, polypeptide 1,
43kDa, mRNA (cDNA clone MGC:23207 IMAGE:4872279), complete cds.
ACCESSION BC014984
VERSION BC014984.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2594)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2594)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923159.
FEATURES Location/Qualifiers
source 1..2594
/db_xref="H-InvDB:HIT000036944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23207 IMAGE:4872279"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2594
/gene="SNAPC1"
/gene_synonym="PTFgamma"
/gene_synonym="SNAP43"
/db_xref="GeneID:6617"
/db_xref="HGNC:HGNC:11134"
/db_xref="MIM:600591"
CDS 13..1119
/gene="SNAPC1"
/gene_synonym="PTFgamma"
/gene_synonym="SNAP43"
/codon_start=1
/product="small nuclear RNA activating complex,
polypeptide 1, 43kDa"
/protein_id="AAH14984.1"
/db_xref="GeneID:6617"
/db_xref="HGNC:HGNC:11134"
/db_xref="MIM:600591"
/translation="MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCG
RMRNLEKNMFTKEALALAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALK
DWDEVLKFQQDLVNAQHFDAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEE
FKDPSDRVMKLITSDVLEEMLNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKN
IVLEHQQWHKDRKNPSLKSKTNDGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQA
SKSRRHRQVKLDSSDSDSASGQGQVKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKE
DKPLSLSMPVITEEEENESLSGTEFTASKKRRKH"
BASE COUNT 883 a 423 c 511 g 777 t
ORIGIN
1 gcttcgggtg ccatggggac tcctcccggc ctgcagaccg actgcgaggc gctgctcagc
61 cgcttccagg agacggacag tgtacgcttc gaggacttca cggagctctg gagaaacatg
121 aagttcggga ctatcttctg tggcagaatg agaaatttag aaaagaacat gtttacaaaa
181 gaagctttag ctttggcttg gcgatatttt ttacctccat acaccttcca gatcagagtt
241 ggtgctttgt atctgctata tggattatat aatacccaac tgtgtcaacc aaaacaaaag
301 atcagagttg ccctgaagga ttgggatgaa gttttaaaat ttcagcaaga tttagtaaat
361 gcacagcatt ttgatgcagc ttatattttt aggaagctac gactagacag agcatttcac
421 tttacagcaa tgcccaaatt gctgtcatat aggatgaaga aaaaaattca ccgagctgaa
481 gttacagaag aatttaagga cccaagtgat cgtgtgatga aacttatcac ttctgatgta
541 ttagaggaaa tgctgaatgt tcatgatcat tatcagaaca tgaaacatgt aatttcagtt
601 gataagtcca agccagataa agccctcagc ttgataaagg atgatttttt tgacaatatt
661 aagaacatag ttttggagca tcagcagtgg cacaaagaca gaaagaatcc atccttaaag
721 tcaaaaacta atgatggaga agaaaaaatg gaaggaaatt cacaagaaac ggagagatgt
781 gaaagggcag aatcattagc gaaaataaaa tcaaaggcct tttcagttgt catacaggca
841 tccaaatcaa gaaggcatcg tcaagtcaaa ctcgactctt ctgactctga ttctgcatct
901 ggtcaagggc aagtcaaagc aactaggaaa aaagagaaga aagaaagatt gaaaccagca
961 ggaaggaaga tgtctctcag aaacaaaggc aatgtgcaga atatacacaa ggaagataaa
1021 cctttaagtc tgagtatgcc tgtaattaca gaagaagaag agaatgaaag tttgagtgga
1081 acagagttca ctgcatccaa gaagaggaga aaacactgaa caaagagcct ggtgtagttt
1141 ttaattttga gttttctgac agaagaaaag attgatattt tgtgtattga acaggaagac
1201 tgccagtatt aaaaaaatcc ttctgggaat ctgtaggtta tttcttggaa attgcaatac
1261 gtagttctag aataaaagta caaaaaatta gaataagaat tctttaacat tttctttaat
1321 gatttgcata aatggagata aaacttgtat ttagtatgta atagaaaaaa ttctgttatt
1381 cgcagattgt tactatttcc tataaggttt tgtgatacta tactgtccta atacagtctg
1441 gtaatactat tctattttat ttaaaatatt ttttattgaa atattaatgt ttattacatg
1501 caaataacta ttttgtatct acagtcggat aatggatttt ttattttgta tatttattct
1561 attttgtata ttgttaagtg caataaagtt tttgccttgc tttatttttt aatacataaa
1621 acttacattc tcataacgtg attgataact taggaagttc acaatgtatt ttctacttct
1681 gcaattaaat attctttagt gcttgtttat tattactaaa tactaattaa gtactaacaa
1741 gtacttaaat actaatgtat taagtattta agtactttct aataaaatct ttaacaataa
1801 taatgtaaat ttcagaatgt gtctctggta cagaatagtt gatattaaca gaaaaaaaaa
1861 aatctgtagc ttcatgaata tgccactctg ttaatttctt gttccagaca ttttaataga
1921 gattgcttga gccatgttgt ttgaattgct gccaatagca gaccatatcc ctatcatgtt
1981 gttggctcaa ctgttttttt tttttcccta atagagatgg agtatcgcta tgttgctcag
2041 gctggtcttg aactcctggg ctcaagctat cctcctgcct cagcctccca aagtactggg
2101 attataggtg tgagctactg tacccagcct taacctgttt cacagttgat tatacttcat
2161 gctgttttcc agcatggtat tattaaggga tttaaagttt gggttgcatg cctgtaatcc
2221 cagcattttg ggaggccgag gtgggcggat cacgaggtca ggagatcgag accatcgtga
2281 ctaacacagt gaaaccccgt ctctaataaa aatacgaaaa attagccagg cgtggtggcg
2341 ggcgcctgta atcccagcta ctcgggaagc tgaggcagga gaatggtgtg aacccagtga
2401 gccgagatcg tgccactgca ctccagcctg ggcaacagag tgagacttcg tctcaaaaaa
2461 aaaaaaaaaa gtttgggttg aagatcaaat tcgtgatatc tctatatcta atctttaaaa
2521 atcagaatgc taatgctgac gcaaataaaa ttttcattta ttagcaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaa
//