LOCUS BC014983 2020 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens TBC1 domain family, member 20, mRNA (cDNA clone
MGC:23197 IMAGE:4861869), complete cds.
ACCESSION BC014983
VERSION BC014983.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2020)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2020)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21389446
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2020
/db_xref="H-InvDB:HIT000036943"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23197 IMAGE:4861869"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2020
/gene="TBC1D20"
/db_xref="GeneID:128637"
/db_xref="HGNC:HGNC:16133"
/db_xref="MIM:611663"
CDS 99..1310
/gene="TBC1D20"
/codon_start=1
/product="TBC1D20 protein"
/protein_id="AAH14983.1"
/db_xref="GeneID:128637"
/db_xref="HGNC:HGNC:16133"
/db_xref="MIM:611663"
/translation="MALRSAQGDGPTSGHWDGGAEKADFNAKRKKKVAEIHQALNSDP
TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLD
VRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGER
LATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFAL
SWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVH
HLLSQIPQDLPYETLISRAGDLFVQFPPSELAREAAAQQQAERTAASTFKDFELASAQ
QRPDMVLRQRFRGLLRPEDRTKDVLTKPRTNRFVKLAVMGLTVALGAAALAVVKSALE
WAPKFQLQLFP"
BASE COUNT 486 a 561 c 526 g 447 t
ORIGIN
1 ccgatgccga gcgggtgcta cgtcccgcgg tcggagccgc gtcttctccc ggctccgcca
61 ccagccgggg ctcgggtggg ggcccggggc cccggggcat ggccctccgg agtgcgcagg
121 gcgacggccc cacctccggc cactgggacg gcggcgcgga gaaggcagac tttaacgcca
181 aaaggaaaaa gaaagtggca gagatacacc aggctctgaa cagtgatccc actgatgtgg
241 ctgcccttag acgcatggct atcagtgaag gagggctcct gactgatgag atcagacgaa
301 aagtgtggcc caagctcctc aatgtcaatg ccaatgaccc acctcctata tcagggaaga
361 acctacggca gatgagcaag gactaccaac aagtgttgct ggacgtccgg cggtcattgc
421 ggcggttccc tcctggcatg ccagaggaac agagagaagg gctccaggaa gaactgattg
481 acatcatcct cctcatcttg gagcgcaacc ctcagctgca ctactaccag ggctaccatg
541 acattgtggt cacatttctg ctggtggtag gcgagaggct ggcaacatcc ctggtagaaa
601 aattatctac ccaccacctc agggatttta tggatccaac aatggacaac accaagcata
661 tattaaacta tctgatgccc atcattgacc aggtgaatcc agagctccat gacttcatgc
721 agagtgctga ggtagggacc atctttgccc tcagctggct catcacctgg tttgggcatg
781 tcctgtctga cttcaggcac gtcgtgcggt tatatgactt cttcctggcc tgccacccac
841 tgatgccgat ttactttgca gccgtgattg tgttgtatcg cgagcaggaa gtcctggact
901 gtgactgtga catggcctcg gtccaccacc tgttgtccca gatccctcag gacttgccct
961 atgagacact gatcagcaga gcaggagacc tttttgttca gtttccccca tccgaacttg
1021 ctcgggaggc cgctgcccaa cagcaagctg agaggacggc agcctctact ttcaaagact
1081 ttgagctggc atcagcccag cagaggcctg atatggtgct gcggcagcgg tttcggggac
1141 ttctgcggcc tgaagatcga acaaaagatg tcctgaccaa gccaaggacc aaccgctttg
1201 tgaaattggc agtgatgggg ctgacagtgg cacttggagc ggctgcactg gctgtggtga
1261 aaagtgccct ggaatgggcc cctaagtttc agctgcagct gtttccctga aagccagaga
1321 agaccttcct cttacatcac attaaggcac ccactcacta ccttggcgtc gttttttggg
1381 tctgacttga ctcgtcaact gctggtctct cccacctggt tggaaatgtc gttggaaact
1441 tgcaaagact ctccagacct tagggaacaa gaggcatcac tcagtccttc tgggacagct
1501 tccctgcctc agaaaacgga atctctgtct gtgaccttct cctgccccat ttcacttgct
1561 caacaccaga ctttaatctg actgtagctc ataagaccct cattccagag agggtgctgc
1621 cccatacccg gaaggaggaa cgctgcacag agaggccaag aagcatctgg acagacaggc
1681 cttgctgggt ttagacctta tgctttttgt ccagtttcat ctcaacacag ctgccatgct
1741 tcagccatgc ctatccaatg acgtctccat aaaaggccca ggaacacggg agcttctgaa
1801 gagctgaaca tgtggaggga ggggaacgag aacttgtcca tgtgccaaga gggtggcgca
1861 cccccactcc atggggacag aagctccagc atttgcccag gacccgtcca gacctcaccc
1921 tgtgtgtatc ttcatctggc tgtttactta tttgtatcct tttctaataa tgtttgtaat
1981 aaactggtaa acataaaaaa aaaaaaaaaa aaaaaaaaaa
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