LOCUS BC014962 1699 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens GDNF family receptor alpha 1, mRNA (cDNA clone
MGC:23045 IMAGE:4874042), complete cds.
ACCESSION BC014962
VERSION BC014962.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1699)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1699)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035690.
FEATURES Location/Qualifiers
source 1..1699
/db_xref="H-InvDB:HIT000036925"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23045 IMAGE:4874042"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1699
/gene="GFRA1"
/gene_synonym="GDNFR"
/gene_synonym="GFR-ALPHA-1"
/gene_synonym="MGC23045"
/gene_synonym="RET1L"
/gene_synonym="RETL1"
/gene_synonym="TRNR1"
/db_xref="GeneID:2674"
/db_xref="HGNC:HGNC:4243"
/db_xref="MIM:601496"
CDS 254..1636
/gene="GFRA1"
/gene_synonym="GDNFR"
/gene_synonym="GFR-ALPHA-1"
/gene_synonym="MGC23045"
/gene_synonym="RET1L"
/gene_synonym="RETL1"
/gene_synonym="TRNR1"
/codon_start=1
/product="GDNF family receptor alpha 1"
/protein_id="AAH14962.1"
/db_xref="GeneID:2674"
/db_xref="HGNC:HGNC:4243"
/db_xref="MIM:601496"
/translation="MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCST
KYRTLRQCVAGKETNFSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRI
YWSMYQSLQGNDLLEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDD
ICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTE
RRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKEN
YADCLLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLK
NAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCAN
LQAQKLKSNVSGNTHLCISNGNYEKEGLGASSHITTKSMAAPPSCGLSPLLVLVVTAL
STLLSLTETS"
BASE COUNT 427 a 482 c 447 g 343 t
ORIGIN
1 cttccaggtt gggtcggacc tgaaccccta aaagcggaac cgcctcccgc cctcgccatc
61 ccggagctga gtcgccggcg gcggtggctg ctgccagacc cggagtttcc tctttcactg
121 gatggagctg aactttgggc ggccagagca gcacagctgt ccggggatcg ctgcatgctg
181 agctccctcg gcaagaccca gcggcggctc gggatttttt tgggggggcg gggaccagcc
241 ccgcgccggc accatgttcc tggcgaccct gtacttcgcg ctgccgctct tggacttgct
301 cctgtcggcc gaagtgagcg gcggagaccg cctggattgc gtgaaagcca gtgatcagtg
361 cctgaaggag cagagctgca gcaccaagta ccgcacgcta aggcagtgcg tggcgggcaa
421 ggagaccaac ttcagcctgg catccggcct ggaggccaag gatgagtgcc gcagcgccat
481 ggaggccctg aagcagaagt cgctctacaa ctgccgctgc aagcggggta tgaagaagga
541 gaagaactgc ctgcgcattt actggagcat gtaccagagc ctgcagggaa atgatctgct
601 ggaggattcc ccatatgaac cagttaacag cagattgtca gatatattcc gggtggtccc
661 attcatatca gtggagcaca ttcccaaagg gaacaactgc ctggatgcag cgaaggcctg
721 caacctcgac gacatttgca agaagtacag gtcggcgtac atcaccccgt gcaccaccag
781 cgtgtccaat gatgtctgca accgccgcaa gtgccacaag gccctccggc agttctttga
841 caaggtcccg gccaagcaca gctacggaat gctcttctgc tcctgccggg acatcgcctg
901 cacagagcgg aggcgacaga ccatcgtgcc tgtgtgctcc tatgaagaga gggagaagcc
961 caactgtttg aatttgcagg actcctgcaa gacgaattac atctgcagat ctcgccttgc
1021 ggattttttt accaactgcc agccagagtc aaggtctgtc agcagctgtc taaaggaaaa
1081 ctacgctgac tgcctcctcg cctactcggg gcttattggc acagtcatga cccccaacta
1141 catagactcc agtagcctca gtgtggcccc atggtgtgac tgcagcaaca gtgggaacga
1201 cctagaagag tgcttgaaat ttttgaattt cttcaaggac aatacatgtc ttaaaaatgc
1261 aattcaagcc tttggcaatg gctccgatgt gaccgtgtgg cagccagcct tcccagtaca
1321 gaccaccact gccactacca ccactgccct ccgggttaag aacaagcccc tggggccagc
1381 agggtctgag aatgaaattc ccactcatgt tttgccaccg tgtgcaaatt tacaggcaca
1441 gaagctgaaa tccaatgtgt cgggcaatac acacctctgt atttccaatg gtaattatga
1501 aaaagaaggt ctcggtgctt ccagccacat aaccacaaaa tcaatggctg ctcctccaag
1561 ctgtggtctg agcccactgc tggtcctggt ggtaaccgct ctgtccaccc tattatcttt
1621 aacagaaaca tcatagctgc attaaaaaaa tacaatatgg acatgtaaaa agacaaaaac
1681 caaaaaaaaa aaaaaaaaa
//