LOCUS BC014851 2101 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens LFNG O-fucosylpeptide
3-beta-N-acetylglucosaminyltransferase, mRNA (cDNA clone MGC:22145
IMAGE:4453156), complete cds.
ACCESSION BC014851
VERSION BC014851.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2101)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2101)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: a Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58696421.
FEATURES Location/Qualifiers
source 1..2101
/db_xref="H-InvDB:HIT000036872"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22145 IMAGE:4453156"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2101
/gene="LFNG"
/gene_synonym="SCDO3"
/db_xref="GeneID:3955"
/db_xref="HGNC:HGNC:6560"
/db_xref="MIM:602576"
CDS 89..841
/gene="LFNG"
/gene_synonym="SCDO3"
/codon_start=1
/product="LFNG protein"
/protein_id="AAH14851.1"
/db_xref="GeneID:3955"
/db_xref="HGNC:HGNC:6560"
/db_xref="MIM:602576"
/translation="MTPGRCCLAADIQVETFIFTDGEDEALARHTGNVVITNCSAAHS
RQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLD
RPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPD
DCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVK
GPFSVEADPSRFRSIHCHLYPDTPWCPRTAIF"
BASE COUNT 399 a 579 c 628 g 495 t
ORIGIN
1 ggagggtttt gctctttgtg tgggtgtgtg agtggctatg atcctagttg tccagctgct
61 gcgtggagaa taagtaaagc aggtctgaat gacaccaggt cgctgctgtc ttgcggctga
121 cattcaggta gagacgttca tcttcactga cggggaagat gaggccctgg ccaggcacac
181 gggcaacgtg gtcatcacaa actgctcggc cgcccacagc cgccaggcgc tgtcctgcaa
241 gatggccgtg gagtatgacc gcttcatcga gtccggcagg aagtggttct gccacgtgga
301 cgatgacaac tacgtcaacc tgcgggccct gctgcggctg ctggccagct acccgcacac
361 gcgggacgtc tacgtcggca agcccagcct ggacaggccc atccaggcca tggagcgggt
421 cagcgagaac aaggtgcgtc ctgtccactt ctggtttgcc acgggcggcg ctggcttctg
481 catcagccgt gggctggctc tgaagatgag cccgtgggcc agcgggggtc acttcatgaa
541 tacggctgag cggatccggc tgcctgatga ctgcaccatc ggctacatcg tggaggccct
601 gctgggtgtg cccctcatcc gcagcggcct cttccactcc cacctggaga acctgcagca
661 ggtgcccacc tcggagctcc acgagcaggt gacgctgagc tacggtatgt ttgaaaacaa
721 gcggaacgcc gtccacgtga aggggccctt ctcggtggag gccgacccat ccaggttccg
781 ctccatccac tgccacctgt acccggacac accctggtgt ccccgcactg ccatcttcta
841 gtggccatgg ctgagaccca atccctgggc gcccctggta tccaaagggc ccagggaccc
901 tgttgcgctg ccctggcctc ggcattcgag gctcccctag ggccgtgcct gtgcgtgtgc
961 gtgtgcatgt gcgtgtgtgt gtgtgtgtac tgcatgccca cccgggtagc aggctgctgg
1021 gcagttctgc tctgtggagg ggcgggcacc agcgccactt atgtgcctct gctccgaggg
1081 ccagtgggct gcagggcctg cttggaggaa ggatttgtgt gtcggaggcc actccgaggg
1141 caattctgtt aggatttttg gatctttcta cagctacggg gctccgggct actttgcagg
1201 gatgcgatgc gtaggtgcct ttctcttcct gctgaccaca agctctgtgc tgggggtacc
1261 tgtgccctga agtcctggcc cctgtgtcat agccccaagt acgactcact gagccatgct
1321 cattgcaggg gaggctgggt ctgggggtgc gtgacccaat ccccttcctc ctggcctgga
1381 cgctgtggct taagagtaac agcagccacc gcccagttcc agtggcccca cgaagccccc
1441 agtggctggc tgtccagctg ggcaaacagt ggcacccctc ccagctcttc tgagtgggga
1501 gtcttccagg cctcctcaga ggtcttccct ttgcctcccc aggacagggt gagtcagagc
1561 tcagcattta atctcctctc caaagtagag agcaagtcgc ccacagtggg cgtgtctgta
1621 aatattgtga cagtattttt ttactgtgct gttttttttg aaaggggatg ggtaaaaagt
1681 agggtgttct tgttttttgc ttgggagggt gggggtgggg gagggtctta ttttatctta
1741 tcttttctgt ggatcagaaa aaacagaagc caaactcggg gtcatctttg tttttaaagc
1801 tgaagtggga ctgtctggca ctctgtgtat ttatgcgttc cagcatctgg aacctcccat
1861 ccctgccctc ctcctgtgta gctgccacct ccccgctggg cccagcatgg ctcacctgtc
1921 ccgtgggctg tgtttcttgt tgtttttctc tttgcaaaga catagctagg aaagcgaatg
1981 ataagggaaa agttctcagg gaattgaagt gttgttgcta tggtgacgtc cttttgctgt
2041 gaataaaggt gctctttgca gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 a
//