LOCUS BC014678 2271 bp mRNA linear HUM 12-FEB-2004
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 1, mRNA (cDNA clone IMAGE:3860672), partial cds.
ACCESSION BC014678
VERSION BC014678.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2271)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2271)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: e Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2271
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3860672"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2271
/gene="LRFN1"
/gene_synonym="KIAA1484"
/db_xref="GeneID:57622"
CDS <1..1355
/gene="LRFN1"
/gene_synonym="KIAA1484"
/codon_start=3
/product="LRFN1 protein"
/protein_id="AAH14678.1"
/db_xref="GeneID:57622"
/translation="RQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSR
TRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLT
EPGSSDIATPGRPGANDSAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSV
DDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGD
PAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYGDGDSRRVKGSRSLPR
VSHVCSQTNGAGTGAAQAPALPAQDHYEALREVESQAAPAVAVEAKAMEAETASAEPE
VVLGRSLGGSATSLCLLPSEETSGEESRAAVGPRRSRSGALEPPTSAPPTLALVPGGA
AARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTLHSSLGNRARLCLRKKKRNI
"
misc_feature 18..251
/gene="LRFN1"
/gene_synonym="KIAA1484"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 372..596
/gene="LRFN1"
/gene_synonym="KIAA1484"
/note="fn3; Region: Fibronectin type III domain"
/db_xref="CDD:pfam00041"
BASE COUNT 558 a 602 c 604 g 507 t
ORIGIN
1 cacggcaggc ggggggccgg gccctggtgg tggaaggcca ggcggtgagc ctgcgctgcc
61 gagcggtggg tgaccccgag ccggtggtgc actgggtggc acctgatggg cggctgctgg
121 ggaactccag ccggacccgg gtccgggggg acgggacgct ggatgtgacc atcaccacct
181 tgagggacag tggcaccttc acttgtatcg cctccaatgc tgctggggaa gcgacggcgc
241 ccgtggaggt gtgcgtggta cctctgcctc tgatggcacc cccgccggct gccccgccgc
301 ctctcaccga gcccggctcc tctgacatcg ccacgccggg cagaccaggt gccaacgatt
361 ctgcggctga gcgtcggctc gtggcagccg agctcacctc gaactccgtg ctcatccgct
421 ggccagccca gaggcctgtg cccggaatac gcatgtacca ggttcagtac aacagttccg
481 ttgatgactc cctcgtctac aggatgatcc cgtccaccag tcagaccttc ctggtgaatg
541 acctggcggc gggccgtgcc tacgacttgt gcgtgctggc ggtctacgac gacggggcca
601 cagcgctgcc ggcaacgcga gtggtgggct gtgtacagtt caccaccgct ggggatccgg
661 cgccctgccg cccgctgagg gcccatttct tgggcggcac catgatcatc gccatcgggg
721 gcgtcatcgt cgcctcggtc ctcgtcttca tcgttctgct catgatccgc tataaggtgt
781 atggcgacgg ggacagccgc cgcgtcaagg gctccaggtc gctcccgcgg gtcagccacg
841 tgtgctcgca gaccaacggc gcaggcacag gcgcggcaca ggccccggcc ctgccggccc
901 aggaccacta cgaggcgctg cgcgaggtgg agtcccaggc tgcccccgcc gtcgccgtcg
961 aggccaaggc catggaggcc gagacggcat ccgcggagcc ggaggtggtc cttggacgtt
1021 ctctgggcgg ctcggccacc tcgctgtgcc tgctgccatc cgaggaaact tccggggagg
1081 agtctcgggc cgcggtgggc cctcgaagga gccgatccgg cgccctggag ccaccaacct
1141 cggcgccccc tactctagct ctagttcctg ggggagccgc ggcccggccg aggccgcagc
1201 agcgctattc gttcgacggg gactacgggg cactattcca gagccacagt tacccgcgcc
1261 gcgcccggcg gacaaagcgc caccggtcca cgctgcactc cagcctgggc aacagagcga
1321 gactctgtct cagaaaaaaa aaaagaaata tctgacagta gaggacagat taaataaatt
1381 atgatctgct atatcatgac ataaaataca tttactagtg atactgatcc atataattga
1441 gaaagcattt atgatgtatt accaaatgaa gaaagtagat ttaaaaaggt acatgtaatt
1501 tgggcagagg tactttggag aaattaagaa cacaggctct gcagtacaac tttcagggtg
1561 tgattctgaa ctctgacagt tactaacctc gcagtgtctt tttcctcact ggtgaaactg
1621 gaatataaat accatgagat atggctatct caattatcaa gtaagataat ctacataaaa
1681 catagtaata cataacaatt actttacata agttagctgt ttttattaaa gatcactgac
1741 attacatatc ccttaatcca tttttagaaa agaaacatga ggctgctgtt ttcttatgct
1801 aaaatatgtg cttctcaatc agctatcaat atcatgaatg ctaactaaaa ataactttcc
1861 aagcctgatg ttaagcatga atttatttga atcagcagaa ttagcaaaaa cgattctaag
1921 acacgtaaga aaatgttccc tctttaccag caactaggga aatagagaca tgattctgca
1981 tcagaaatca agtttaaaga atctaatctg agaagagata ccaaatcaag aatattagca
2041 agagactgaa tcatgtgttc tatgtgatat gggagattcg tgtaattatt tcaaattgtt
2101 gccatcttag tcatttcata tatttggatt tcatatacct tggatttgtt acttgtacat
2161 ataatcatgg aaatgttact tgtgtatatt tggaaggcat cagatatcac tgattatcat
2221 tctctgtcaa agaaacatta aaatcataga aaatctaaaa aaaaaaaaaa a
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