LOCUS BC014651 1681 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox B6, mRNA (cDNA clone MGC:20183
IMAGE:4548382), complete cds.
ACCESSION BC014651
VERSION BC014651.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1681)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1681)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: a Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24797133.
FEATURES Location/Qualifiers
source 1..1681
/db_xref="H-InvDB:HIT000036831"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20183 IMAGE:4548382"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1681
/gene="HOXB6"
/gene_synonym="Hox-2.2"
/gene_synonym="HU-2"
/db_xref="GeneID:3216"
/db_xref="HGNC:HGNC:5117"
/db_xref="MIM:142961"
CDS 326..1000
/gene="HOXB6"
/gene_synonym="Hox-2.2"
/gene_synonym="HU-2"
/codon_start=1
/product="homeobox B6"
/protein_id="AAH14651.1"
/db_xref="GeneID:3216"
/db_xref="HGNC:HGNC:5117"
/db_xref="MIM:142961"
/translation="MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYG
PGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPE
PRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLE
LEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEE
EEKQAE"
BASE COUNT 409 a 490 c 477 g 305 t
ORIGIN
1 caccacacct aggtcggagc actgtcgtcc ttcagggctc cagcctcttg atatttttgt
61 acttcagtat cagctcgata gagcaaaaga gagagaggac gagagagggg gtcagagaag
121 gggaagcaac ggctctcacg ttgggacaat attatctgga agctgaagaa gaaactgaat
181 actccttcct tcctccccac ccattccttt aaatccggag ggggaaaaaa tcccaaggtc
241 tgcaaaggcg cggcgctcgg actataaaac acaacaaatc ataaacccgg cggagcagca
301 gcggccgcgc gcgcctcccc tcccaatgag ttcctatttc gtgaactcca ccttccccgt
361 cactctggcc agcgggcagg agtccttcct gggccagcta ccgctctatt cgtcgggcta
421 tgcggacccg ctgagacatt accccgcgcc ctacgggcca gggccgggcc aggacaaggg
481 ctttgccact tcctcctatt acccgccggc gggcggtggc tacggccgag cggcgccctg
541 cgactacggg ccggcgccgg ccttctaccg cgagaaagag tcggcctgcg cactctccgg
601 cgccgacgag cagcccccgt tccaccccga gccgcggaag tcggactgcg cgcaggacaa
661 gagcgtgttc ggcgagacag aagagcagaa gtgctccact ccggtctacc cgtggatgca
721 gcggatgaat tcgtgcaaca gttcctcctt tgggcccagc ggccggcgag gccgccagac
781 atacacacgt taccagacgc tggagctgga gaaggagttt cactacaatc gctacctgac
841 gcggcggcgg cgcatcgaga tcgcgcacgc cctgtgcctg acggagaggc agatcaagat
901 atggttccag aaccgacgca tgaagtggaa aaaggagagc aaactgctca gcgcgtctca
961 gctcagtgcc gaggaggagg aagaaaaaca ggccgagtga aggtgctgga aagggaggga
1021 ggacgcgagg ggaaaggcct gtggggagcc acgggcgtca gagagacccg ggaaggaagg
1081 ctctcgggtg ggggagccag gagacctgct ctccggcgca gacaggcggg gcccagcgct
1141 ctcctggacg cccccgcccg cacagctccc ggcgggtgct ctgaggcctc actactcgag
1201 cccacccagc atcccgcgcg cccttccttc ccgaggaact cgcctcagcc tgatcaggct
1261 tcctggtgag aactgaggag cggactcact tgatgtttcc tggaagcaga gcaaaatgct
1321 cttgtccctg tcgcgtctca ttttgtccat gtcccccgtg cacggttcaa tggtagattc
1381 gctgtcccct cagcgggggc cttgaagact ccctgatccc agacctgtcg tctctcccac
1441 cccctcccca aagccactgg aaggagcaca tactacctag aagtaagaag aggagcctca
1501 gaagaaaaca aagttctatt ttattaattt tctatgtgtt gtgtttgtag tcttgtctta
1561 gctctggacg tgaaatactt cgatgatgat gatgatgatg atgatgatga taataataat
1621 aataataaca acaacaacaa caataataaa gatgtgaaaa ctcaaaaaaa aaaaaaaaaa
1681 a
//