LOCUS BC014246 1907 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 9, mRNA (cDNA
clone IMAGE:4642858), partial cds.
ACCESSION BC014246
VERSION BC014246.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1907)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1907)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC014246.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: n Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13514819.
FEATURES Location/Qualifiers
source 1..1907
/db_xref="H-InvDB:HIT000088337"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4642858"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1907
/gene="DHX9"
/gene_synonym="DDX9"
/gene_synonym="LKP"
/gene_synonym="NDH II"
/gene_synonym="NDHII"
/gene_synonym="RHA"
/db_xref="GeneID:1660"
/db_xref="MIM:603115"
CDS 111..>1907
/gene="DHX9"
/gene_synonym="DDX9"
/gene_synonym="LKP"
/gene_synonym="NDH II"
/gene_synonym="NDHII"
/gene_synonym="RHA"
/codon_start=1
/product="DHX9 protein"
/protein_id="AAH14246.1"
/db_xref="GeneID:1660"
/db_xref="MIM:603115"
/translation="MGDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYN
YTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEVPAFGVASPPPLTDTPDTTANAE
GDLPTTMGGPLPPHLALKAENNSEVGASGYGVPGPTWDRGANLKDYYSRKEEQEVQAT
LESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIY
IKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTKKKEGETVEPYKV
NLSQDLEHQLQNIIQELNLEILPPPEDPSVPVALNIGKLAQFEPSQRQNQVGVVPWSP
PQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKK
FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA
VSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHV
IVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGR
TYPVQEYFLEDCIQMTHFVPPPKAKKKKKKKKK"
misc_feature 123..317
/gene="DHX9"
/gene_synonym="DDX9"
/gene_synonym="LKP"
/gene_synonym="NDH II"
/gene_synonym="NDHII"
/gene_synonym="RHA"
/note="DSRM; Region: Double-stranded RNA binding motif"
/db_xref="CDD:smart00358"
misc_feature 651..863
/gene="DHX9"
/gene_synonym="DDX9"
/gene_synonym="LKP"
/gene_synonym="NDH II"
/gene_synonym="NDHII"
/gene_synonym="RHA"
/note="DSRM; Region: Double-stranded RNA binding motif"
/db_xref="CDD:smart00358"
misc_feature 1251..1844
/gene="DHX9"
/gene_synonym="DDX9"
/gene_synonym="LKP"
/gene_synonym="NDH II"
/gene_synonym="NDHII"
/gene_synonym="RHA"
/note="HrpA; Region: HrpA-like helicases [DNA replication,
recombination, and repair]"
/db_xref="CDD:COG1643"
BASE COUNT 599 a 382 c 448 g 478 t
ORIGIN
1 gcgagttgct gtgcgtttct ctgttgtctc ggtagaaggc cagagtcaca cacggtccta
61 agagctgggc accaggaagc gaaggctgat ctgaagaaga cacttgaatc atgggtgacg
121 ttaaaaattt tctgtatgcc tggtgtggca aaaggaagat gaccccatcc tatgaaatta
181 gagcagtggg gaacaaaaac aggcagaaat tcatgtgtga ggttcaggtg gaaggttata
241 attacactgg catgggaaat tccaccaata aaaaagatgc acaaagcaat gctgccagag
301 actttgttaa ctatttggtt cgaataaatg aaataaagag tgaagaagtt ccagcttttg
361 gggtagcatc tccgccccca cttactgata ctcctgacac tacagcaaat gctgaaggag
421 atttaccaac aaccatggga ggacctcttc ctccacatct ggctctcaaa gcagaaaata
481 attctgaggt aggggcctct ggctatggtg ttcctgggcc cacctgggac cgaggagcca
541 acttgaagga ttactactca agaaaggaag aacaagaagt gcaagcgact ctagaatcag
601 aagaagtgga tttaaatgct gggcttcatg gaaactggac cttggaaaat gctaaagctc
661 gtctaaacca atattttcag aaagaaaaga tccaaggaga atataagtac acccaagtgg
721 gtcctgatca caacaggagc tttattgcag aaatgaccat ttatatcaag cagctgggca
781 gaaggatttt tgcacgagaa catggatcaa ataagaaatt ggcagcacag tcctgtgccc
841 tgtcacttgt cagacaactg taccatcttg gagtggttga agcttactcc ggacttacaa
901 agaagaagga aggagagaca gtggagcctt acaaagtaaa cctctctcaa gatttagagc
961 atcagctgca aaacatcatt caagagctaa atcttgagat tttgcccccg cctgaagatc
1021 cttctgtgcc agttgcactc aacattggca aattggctca gttcgaacca tctcagcgac
1081 aaaaccaagt gggtgtggtt ccttggtcac ctccacaatc caactggaat ccttggacta
1141 gtagcaacat tgatgagggg cctctggctt ttgctactcc agagcaaata agcatggacc
1201 tcaagaatga attgatgtac cagttggaac aggatcatga tttgcaagca atcttgcagg
1261 agagagagtt actgcctgtg aagaaatttg aaagtgagat tctggaagca atcagccaaa
1321 attcagttgt cattattaga ggggctactg gatgtgggaa aaccacacag gttccccagt
1381 tcattctaga tgactttatc cagaatgacc gagcagcaga gtgtaacatc gtagtaactc
1441 agcccagaag aatcagtgcg gtttctgtgg cagagcgagt tgcatttgaa agaggagaag
1501 agcctggaaa aagctgtggc tacagcgttc gatttgagtc tatacttcct cgtcctcatg
1561 ccagtataat gttttgtact gtaggtgtgc tcctgagaaa attagaagca ggcattcgag
1621 gaatcagtca tgtaattgta gatgaaatac atgaaagaga tattaatact gacttccttt
1681 tggtagtact gcgtgatgtt gttcaggctt atcctgaagt tcgcattgtt cttatgtctg
1741 ctactattga taccagcatg ttttgtgaat atttcttcaa ttgccccatc attgaagttt
1801 atgggaggac ttacccagtt caagaatatt ttctggaaga ctgcattcag atgacccact
1861 ttgttcctcc cccaaaagcc aaaaaaaaaa aaaaaaaaaa aaaaaaa
//