LOCUS BC014225 1265 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens HOP homeobox, mRNA (cDNA clone MGC:20820
IMAGE:4335211), complete cds.
ACCESSION BC014225
VERSION BC014225.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1265)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1265)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC014225.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47717121.
FEATURES Location/Qualifiers
source 1..1265
/db_xref="H-InvDB:HIT000036588"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20820 IMAGE:4335211"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1265
/gene="HOPX"
/gene_synonym="Cameo"
/gene_synonym="HOP"
/gene_synonym="LAGY"
/gene_synonym="NECC1"
/gene_synonym="OB1"
/gene_synonym="SMAP31"
/gene_synonym="Toto"
/db_xref="GeneID:84525"
/db_xref="HGNC:HGNC:24961"
/db_xref="MIM:607275"
CDS 305..526
/gene="HOPX"
/gene_synonym="Cameo"
/gene_synonym="HOP"
/gene_synonym="LAGY"
/gene_synonym="NECC1"
/gene_synonym="OB1"
/gene_synonym="SMAP31"
/gene_synonym="Toto"
/codon_start=1
/product="HOPX protein"
/protein_id="AAH14225.1"
/db_xref="GeneID:84525"
/db_xref="HGNC:HGNC:24961"
/db_xref="MIM:607275"
/translation="MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSE
EETQKWFKQRLAKWRRSEGLPSECRSVID"
BASE COUNT 330 a 312 c 321 g 302 t
ORIGIN
1 cgcaggcagg gatacagttc ctgcaagggg tcccgggggg cgcgggaggc gcaggacgct
61 aggctctgcc gtcagcccgc aacagcgctc agtccaggga gggaggcccg ggtggggggc
121 agccgtaagc ccccgctcag cgtgcagcca ccggggactt gcgcggccgt ggcaccgctg
181 gagggggcgg cctggggctg gggctgcccg gcggcgccgc gaccgccttc cttcgctgcg
241 tcctgcccgc cccacgcctc gctcaccgcc gccgcttctc cctgccccgc agcgcgcagg
301 gaccatgtcg gcggagaccg cgagcggccc cacagaggac caggtggaaa tcctggagta
361 caacttcaac aaggtcgaca agcacccgga ttccaccacg ctgtgcctca tcgcggccga
421 ggcaggcctt tccgaggagg agacccagaa atggtttaag cagcgcctgg caaagtggcg
481 gcgctcagaa ggcctgccct cagagtgcag atccgtcata gactaaggag atggcaggca
541 ttgacagctt cactccatga aggccatctc tgtttctctc ctccgcttaa ccaagctgtt
601 gtggtttttc agcatagtgt tgtatgttcc attgctagct gtcctgctgt ttaacacagt
661 gttgtatttt ttttctaaat gtacataatt agaaaagaaa ataacaatag gaagctatgt
721 gtatcttctg tgtaaagcag tggcttcact ggaaaaatgg tgtggctagc atttcccttt
781 gagtcatgat gacagatggt gtgaaaacca tctaagtttg cttttgacca tcacctccca
841 gtagcaattt gctttcataa tccatttagc aatccaggcc tctgttgaaa agataatatg
901 agggagaagg gaacacattt ccttctgaac ttacttccct aagtcacttt ccttatgtat
961 catctaatac aatgatggtt gagtgaaaat acagaagggg tgtttgagta ttcagatttc
1021 ataaaacact tccttggaat atagctgcat taacttggaa agaagcctgt tgggccagaa
1081 gacagaaact ccaactggca aaaaagcaag catctaagaa aaaaaaccac caaagttctt
1141 gaatttacta tatttaaatg cattggttaa gtttattttg ctaaataaag tgaactgctt
1201 tttgtctcta aaatgatatt ctaaataaaa ccttaacttt ttgttgaaaa aaaaaaaaaa
1261 aaaaa
//