LOCUS BC014035 1126 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens caldesmon 1, mRNA (cDNA clone IMAGE:4547970), partial
cds.
ACCESSION BC014035
VERSION BC014035.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1126)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1126)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC014035.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15149462.
FEATURES Location/Qualifiers
source 1..1126
/db_xref="H-InvDB:HIT000088259"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4547970"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1126
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="NAG22"
/db_xref="GeneID:800"
/db_xref="MIM:114213"
CDS 185..>1126
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="NAG22"
/codon_start=1
/product="CALD1 protein"
/protein_id="AAH14035.1"
/db_xref="GeneID:800"
/db_xref="MIM:114213"
/translation="MLGGSGSHGRRSLAALSQIAYQRNDDDEEEAARERRRRARQERL
RQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTTTNTQVEGDDEAAFLERLARREERRQ
KRLQEALERQKEFDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYEIEETE
TVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIKDEKIKKDKEPKEEVK
SFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLE
ELRSRRGETESEEFEKLKQKQQEAALELEELKKKKKKK"
misc_feature 236..700
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="NAG22"
/note="Caldesmon; Region: Caldesmon"
/db_xref="CDD:pfam02029"
misc_feature 839..1045
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="NAG22"
/note="Caldesmon; Region: Caldesmon"
/db_xref="CDD:pfam02029"
BASE COUNT 378 a 269 c 339 g 140 t
ORIGIN
1 ccagactttc gtcacaggga cagaccaacg tgttaacaca aagggagaac acgggagcat
61 cctgcaccgt gcatttcagc cacagatcac atggcccctc cgcgggccca gcccacgccc
121 tgaccgcccg gcctggccag gtctccgtat ctctctgccc cgccgcccct tcccaactgc
181 ggacatgctg ggtggatccg gatcgcatgg aagacgcagc ctggccgcgc tctcccaaat
241 cgcctaccag aggaatgacg atgatgaaga ggaggcagcc cgggaacggc gccgccgagc
301 ccgacaggaa cggctgcggc agaagcagga ggaagaatcc ttgggacagg tgaccgacca
361 ggtggaggtg aatgcccaga acagtgtgcc tgacgaggag gccaagacaa ccaccacaaa
421 cactcaagtg gaaggggatg atgaggccgc attcctggag cgcctggctc ggcgtgagga
481 aagacgccaa aaacgccttc aggaggctct ggagcggcag aaggagttcg acccaacaat
541 aacagatgca agtctgtcgc tcccaagcag aagaatgcaa aatgacacag cagaaaatga
601 aactaccgag aaggaagaaa aaagtgaaag tcgccaagaa agatacgaga tagaggaaac
661 agaaacagtc accaagtcct accagaagaa tgattggagg gatgctgaag aaaacaagaa
721 agaagacaag gaaaaggagg aggaggaaga ggagaagcca aagcgaggga gcattggaga
781 aaatcagatc aaagatgaaa agattaaaaa ggacaaagaa cccaaagaag aagttaagag
841 cttcatggat cgaaagaagg gatttacaga agttaagtcg cagaatggag aattcatgac
901 ccacaaactt aaacatactg agaatacttt cagccgccct ggagggaggg ccagcgtgga
961 caccaaggag gctgagggcg ccccccaggt ggaagccggc aaaaggctgg aggagcttcg
1021 tagtcgtcgc ggggagaccg agagcgaaga gttcgagaag ctcaaacaga agcagcagga
1081 ggcggctttg gagctggagg aactcaagaa aaaaaaaaaa aaaaaa
//