LOCUS BC013973 1370 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog,
yeast), mRNA (cDNA clone MGC:12555 IMAGE:4137664), complete cds.
ACCESSION BC013973
VERSION BC013973.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1370)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1370)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: k Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37577121.
FEATURES Location/Qualifiers
source 1..1370
/db_xref="H-InvDB:HIT000036437"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12555 IMAGE:4137664"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1370
/gene="UBE2J1"
/gene_synonym="CGI-76"
/gene_synonym="HSPC153"
/gene_synonym="HSPC205"
/gene_synonym="HSU93243"
/gene_synonym="MGC12555"
/gene_synonym="NCUBE1"
/gene_synonym="Ubc6p"
/db_xref="GeneID:51465"
/db_xref="HGNC:HGNC:17598"
CDS 294..1250
/gene="UBE2J1"
/gene_synonym="CGI-76"
/gene_synonym="HSPC153"
/gene_synonym="HSPC205"
/gene_synonym="HSU93243"
/gene_synonym="MGC12555"
/gene_synonym="NCUBE1"
/gene_synonym="Ubc6p"
/codon_start=1
/product="ubiquitin-conjugating enzyme E2, J1 (UBC6
homolog, yeast)"
/protein_id="AAH13973.1"
/db_xref="GeneID:51465"
/db_xref="HGNC:HGNC:17598"
/translation="METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFT
VRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETW
QPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVL
LPLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTF
QGATASTSYGVQNSSAASFHQPTQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQ
PRDNHTDHGGSAVLIVILTLALAALIFRRIYLANEYIFDFEL"
BASE COUNT 396 a 350 c 340 g 284 t
ORIGIN
1 aggtgacctc cagcccgggc gcccggttca gcgccgcccc ggccggcgcc ggtgcctgcc
61 aggcactcag ggaggcgggg gcgcagtgga ggaggcggcg ccatcgcgaa gcgagcgcct
121 cgcccgcact cagccttgcc accccgcccg cagtccaggc tggactgggc ggcatttgcc
181 gaggctcctc ggccaggccc cgtccgcccg agccgcgctg agacccgggc agcggccgcg
241 tggagaggag gtggcagcgg cccgggaggc cggagccaag ccagcgaccc accatggaga
301 cccgctacaa cctgaagagt ccggctgtta aacgtttaat gaaagaagcg gcagaattga
361 aagatccaac agatcattac catgcgcagc ctttagagga taaccttttt gaatggcact
421 tcacggttag agggccccca gactccgatt ttgatggagg agtttatcac gggcggatag
481 tactgccacc agagtatccc atgaaaccac caagcattat tctcctaacg gctaatggtc
541 gatttgaagt gggcaagaaa atctgtttga gcatctcagg ccatcatcct gaaacttggc
601 agccttcgtg gagtataagg acagcattat tagccatcat tgggtttatg ccaacaaaag
661 gagagggagc cataggttct ctagattaca ctcctgagga aagaagagca cttgccaaaa
721 aatcacaaga tttctgttgt gaaggatgtg gctctgccat gaaggatgtc ctgttgcctt
781 taaaatctgg aagcgattca agccaagctg accaagaagc caaagaactg gctaggcaaa
841 taagctttaa ggcagaagtc aattcatctg gaaagactat ctctgagtca gacttaaacc
901 actctttttc actaactgat ttacaagatg atatacctac aacattccag ggtgctacgg
961 ccagtacatc gtacggagtc cagaattcct cagcagcatc ctttcatcaa cctacccaac
1021 ctgtagctaa gaatacctcc atgagccctc gacagcgccg ggcccagcag cagagtcaga
1081 gaaggttgtc tacttcacca gatgtaatcc agggccacca gccaagagac aaccacactg
1141 atcatggtgg gtcagctgta ctgattgtca tcctgacttt ggcattggca gctcttatat
1201 tccgacgaat atatctggca aacgaataca tatttgactt tgagttataa tatggttttg
1261 tgacttatga gctgtgactc aactgcttca ttaaacattc tgcattgggt ataatctaaa
1321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//