LOCUS BC013693 2146 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neurotrophic tyrosine kinase, receptor, type 3, mRNA
(cDNA clone MGC:17113 IMAGE:4181574), complete cds.
ACCESSION BC013693
VERSION BC013693.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2146)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2146)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 59889559.
FEATURES Location/Qualifiers
source 1..2146
/db_xref="H-InvDB:HIT000036328"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17113 IMAGE:4181574"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2146
/gene="NTRK3"
/gene_synonym="gp145(trkC)"
/gene_synonym="TRKC"
/db_xref="GeneID:4916"
/db_xref="HGNC:HGNC:8033"
/db_xref="MIM:191316"
CDS 6..1844
/gene="NTRK3"
/gene_synonym="gp145(trkC)"
/gene_synonym="TRKC"
/codon_start=1
/product="neurotrophic tyrosine kinase, receptor, type 3"
/protein_id="AAH13693.1"
/db_xref="GeneID:4916"
/db_xref="HGNC:HGNC:8033"
/db_xref="MIM:191316"
/translation="MDVSLCPAKCSFWRIFLLGSVWLDYVGSVLACPANCVCSKTEIN
CRRPDDGNLFPLLEGQDSGNSNGNASINITDISRNITSIHIENWRSLHTLNAVDMELY
TGLQKLTIKNSGLRSIQPRAFAKNPHLRYINLSSNRLTTLSWQLFQTLSLRELQLEQN
FFNCSCDIRWMQLWQEQGEAKLNSQNLYCINADGSQLPLFRMNISQCDLPEISVSHVN
LTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQTNLNWTNVHAINLTLVNVTSE
DNGFTLTCIAENVVGMSNASVALTVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLH
WLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN
GHFLKEPFPESTDNFILFDEVSPTPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLF
VMINKYGRRSKFGMKGPVAVISGEEDSASPLHHINHGITTPSSLDAGPDTVVIGMTRI
PVIENPQYFRQGHNCHKPDTWVFSNIDNHGILNLKDNRDHLVPSTHYIYEEPEVQSGE
VSYPRSHGFREIMLNPISLPGHSKPLNHGIYVEDVNVYFSKGRHGF"
BASE COUNT 534 a 599 c 514 g 499 t
ORIGIN
1 cggagatgga tgtctctctt tgcccagcca agtgtagttt ctggcggatt ttcttgctgg
61 gaagcgtctg gctggactat gtgggctccg tgctggcttg ccctgcaaat tgtgtctgca
121 gcaagactga gatcaattgc cggcggccgg acgatgggaa cctcttcccc ctcctggaag
181 ggcaggattc agggaacagc aatgggaacg ccagtatcaa catcacggac atctcaagga
241 atatcacttc catacacata gagaactggc gcagtcttca cacgctcaac gccgtggaca
301 tggagctcta caccggactt caaaagctga ccatcaagaa ctcaggactt cggagcattc
361 agcccagagc ctttgccaag aacccccatt tgcgttatat aaacctgtca agtaaccggc
421 tcaccacact ctcgtggcag ctcttccaga cgctgagtct tcgggaattg cagttggagc
481 agaacttttt caactgcagc tgtgacatcc gctggatgca gctctggcag gagcaggggg
541 aggccaagct caacagccag aacctctact gcatcaacgc tgatggctcc cagcttcctc
601 tcttccgcat gaacatcagt cagtgtgacc ttcctgagat cagcgtgagc cacgtcaacc
661 tgaccgtacg agagggtgac aatgctgtta tcacttgcaa tggctctgga tcaccccttc
721 ctgatgtgga ctggatagtc actgggctgc agtccatcaa cactcaccag accaatctga
781 actggaccaa tgttcatgcc atcaacttga cgctggtgaa tgtgacgagt gaggacaatg
841 gcttcaccct gacgtgcatt gcagagaacg tggtgggcat gagcaatgcc agtgttgccc
901 tcactgtcta ctatccccca cgtgtggtga gcctggagga gcctgagctg cgcctggagc
961 actgcatcga gtttgtggtg cgtggcaacc ccccaccaac gctgcactgg ctgcacaatg
1021 ggcagcctct gcgggagtcc aagatcatcc atgtggaata ctaccaagag ggagagattt
1081 ccgagggctg cctgctcttc aacaagccca cccactacaa caatggcaac tataccctca
1141 ttgccaaaaa cccactgggc acagccaacc agaccatcaa tggccacttc ctcaaggagc
1201 cctttccaga gagcacggat aactttatct tgtttgacga agtgagtccc acacctccta
1261 tcactgtgac ccacaaacca gaagaagaca cttttggggt atccatagca gttggacttg
1321 ctgcttttgc ctgtgtcctg ttggtggttc tcttcgtcat gatcaacaaa tatggtcgac
1381 ggtccaaatt tggaatgaag ggtcccgtgg ctgtcatcag tggtgaggag gactcagcca
1441 gcccactgca ccacatcaac cacggcatca ccacgccctc gtcactggat gcggggcccg
1501 acactgtggt cattggcatg actcgcatcc ctgtcattga gaacccccag tacttccgtc
1561 agggacacaa ctgccacaag ccggacacgt gggtcttttc aaacatagac aatcatggga
1621 tattaaactt gaaggacaat agagatcatc tagtcccatc aactcactat atatatgagg
1681 aacctgaggt ccagagtggg gaagtgtctt acccaaggtc acatggtttc agagaaatta
1741 tgttgaatcc aataagcctt cccggacatt ccaagcctct taaccatggc atctatgttg
1801 aggatgtcaa tgtttatttc agcaaaggac gtcatggctt ttaaaaactc cttttaagcc
1861 tccttgtttt gatgtcacct tggtaggctg ggccctctga gaggttggaa gctctaggca
1921 ttgttctctt tggatccagg gatgctaagt agaaactgca tgagccacca gtgccccggc
1981 accctttaac accaccagat gggtgttttc ccccatccac cactggcagg gttgcccctt
2041 ccctccaatc atcactgtgc tccttttttc ccggcctacg aggcagctcc tgccactatc
2101 tttagagcca ataaagagaa ttaaaaacct gaaaaaaaaa aaaaaa
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