LOCUS BC013642 1086 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens chitinase domain containing 1, mRNA (cDNA clone
IMAGE:4151791), partial cds.
ACCESSION BC013642
VERSION BC013642.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1086)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1086)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: c Column: 22.
FEATURES Location/Qualifiers
source 1..1086
/db_xref="H-InvDB:HIT000088142"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4151791"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1086
/gene="CHID1"
/gene_synonym="FLJ42707"
/gene_synonym="MGC3234"
/db_xref="GeneID:66005"
/db_xref="HGNC:HGNC:28474"
/db_xref="IMGT/GENE-DB:28474"
/db_xref="MIM:28474"
CDS <1..961
/gene="CHID1"
/gene_synonym="FLJ42707"
/gene_synonym="MGC3234"
/codon_start=2
/product="CHID1 protein"
/protein_id="AAH13642.1"
/db_xref="GeneID:66005"
/db_xref="HGNC:HGNC:28474"
/db_xref="IMGT/GENE-DB:28474"
/db_xref="MIM:28474"
/translation="RHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGR
EMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKT
VVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPG
TDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWR
SKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPQMVWDSQVSEHFFEYKKSRS
GRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL"
BASE COUNT 240 a 302 c 326 g 218 t
ORIGIN
1 cagacacttt gctggggatg tactgggcta tgtcactcca tggaacagcc atggctacga
61 tgtcaccaag gtctttggga gcaagttcac acagatctca cccgtctggc tgcagctgaa
121 gagacgtggc cgtgagatgt ttgaggtcac gggcctccac gacgtggacc aagggtggat
181 gcgagctgtc aggaagcatg ccaagggcct gcacatagtg cctcggctcc tgtttgagga
241 ctggacttac gatgatttcc ggaacgtctt agacagtgag gatgagatag aggagctgag
301 caagaccgtg gtccaggtgg caaagaacca gcatttcgat ggcttcgtgg tggaggtctg
361 gaaccagctg ctaagccaga agcgcgtggg cctcatccac atgctcaccc acttggccga
421 ggctctgcac caggcccggc tgctggccct cctggtcatc ccgcctgcca tcacccccgg
481 gaccgaccag ctgggcatgt tcacgcacaa ggagtttgag cagctggccc ccgtgctgga
541 tggtttcagc ctcatgacct acgactactc tacagcgcat cagcctggcc ctaatgcacc
601 cctgtcctgg gttcgagcct gcgtccaggt cctggacccg aagtccaagt ggcgaagcaa
661 aatcctcctg gggctcaact tctatggtat ggactacgcg acctccaagg atgcccgtga
721 gcctgttgtc ggggccaggt acatccagac actgaaggac cacaggcccc agatggtgtg
781 ggacagccag gtctcagagc acttcttcga gtacaagaag agccgcagtg ggaggcacgt
841 cgtcttctac ccaaccctga agtccctgca ggtgcggctg gagctggccc gggagctggg
901 cgttggggtc tctatctggg agctgggcca gggcctggac tacttctacg acctgctcta
961 ggtgggcatt gcggcctccg cggtggacgt gttcttttct aagccatgga gtgagtgagc
1021 aggtgtgaaa tacaggcctc cactccgttt gctgtgaaaa aaaaaaaaaa aaaaaaaaaa
1081 aaaaaa
//