LOCUS BC013610 1444 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens claudin domain containing 1, mRNA (cDNA clone MGC:9861
IMAGE:3866668), complete cds.
ACCESSION BC013610
VERSION BC013610.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1444)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1444)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: l Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11096339.
FEATURES Location/Qualifiers
source 1..1444
/db_xref="H-InvDB:HIT000036304"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9861 IMAGE:3866668"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1444
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
CDS 82..843
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/codon_start=1
/product="claudin domain containing 1"
/protein_id="AAH13610.1"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
/translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSS
DLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDV
VTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLC
ACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCL
ACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
BASE COUNT 410 a 276 c 301 g 457 t
ORIGIN
1 ggggagagta gggtgctgtg gtctgagcta gagggtgaag ctggcggagc aggaggatgg
61 gcgagcagtc tgaatgccag aatggataac cgttttgcta cagcatttgt aattgcttgt
121 gtgcttagcc tcatttccac catctacatg gcagcctcca ttggcacaga cttctggtat
181 gaatatcgaa gtccagttca agaaaattcc agtgatttga ataaaagcat ctgggatgaa
241 ttcattagtg atgaggcaga tgaaaagact tataatgatg cactttttcg atacaatggc
301 acagtgggat tgtggagacg gtgtatcacc atacccaaaa acatgcattg gtatagccca
361 ccagaaagga cagagtcatt tgatgtggtc acaaaatgtg tgagtttcac actaactgag
421 cagttcatgg agaaatttgt tgatcccgga aaccacaata gcgggattga tctccttagg
481 acctatcttt ggcgttgcca gttcctttta ccttttgtga gtttaggttt gatgtgcttt
541 ggggctttga tcggactttg tgcttgcatt tgccgaagct tatatcccac cattgccacg
601 ggcattctcc atctccttgc aggtctgtgt acactgggct cagtaagttg ttatgttgct
661 ggaattgaac tactccacca gaaactagag ctccctgaca atgtatccgg tgaatttgga
721 tggtccttct gcctggcttg tgtctctgct cccttacagt tcatggcttc tgctctcttc
781 atctgggctg ctcacaccaa ccggaaagag tacaccttaa tgaaggcata tcgtgtggca
841 tgagcaagaa actgcctgct ttacaattgc catttttatt tttttaaaat aatactgata
901 ttttccccac ctctcaattg tttttaattt ttatttgtgg atataccatt ttattatgaa
961 aatctatttt atttatacac attcaccact aaatacacac ttaataccac taaaatttat
1021 gtggtttact ttaagcgatg ccatctttca aataaactaa tctaggtcta gacagaaaga
1081 aatggataga gacttgacac aaatttatga aagaaaattg ggagtaggaa tgtgaccgaa
1141 aacaagttgt gctaatgtct gttagacttt tcagtaaaac taaagtaact gtatctgttc
1201 aactaaaaac tctatattag tttctttggg aaacctctca tcgtcaaaac tttatgttca
1261 ctttgctgtt gtagatagcc agtcaaccag cagtattagt gctgttttca aagatttaag
1321 ctctataaaa ttgggaaatt atctaagatc attttcccta agcattgaca catagcttca
1381 tctgaggtga gatatggcag ctgtttgtat ctgcactgtg tctgtctaca aaaaaaaaaa
1441 aaaa
//