LOCUS BC013331 1337 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens H2A histone family, member Y, mRNA (cDNA clone
MGC:13692 IMAGE:4077577), complete cds.
ACCESSION BC013331
VERSION BC013331.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1337)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1337)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336744.
FEATURES Location/Qualifiers
source 1..1337
/db_xref="H-InvDB:HIT000036219"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13692 IMAGE:4077577"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1337
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="MACROH2A1.2"
/gene_synonym="mH2A1"
/db_xref="GeneID:9555"
CDS 137..1255
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="MACROH2A1.2"
/gene_synonym="mH2A1"
/codon_start=1
/product="H2AFY protein"
/protein_id="AAH13331.1"
/db_xref="GeneID:9555"
/translation="MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVG
APVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIAS
GGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK
KQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINP
TNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHC
NSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAI
SSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN"
misc_feature 194..496
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="MACROH2A1.2"
/gene_synonym="mH2A1"
/note="H2A; Region: Histone 2A"
/db_xref="CDD:smart00414"
misc_feature 716..1234
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="MACROH2A1.2"
/gene_synonym="mH2A1"
/note="hismacro; Region: Domain found in Macro histone 2
(predicted phosphoesterase)"
/db_xref="CDD:LOAD_hismacro"
BASE COUNT 390 a 336 c 360 g 251 t
ORIGIN
1 gggggtctac attagtaatt cccaacttgg gtccgaaagt gaacttttgc tgaagcgaag
61 tagctaaccg cttccatgtg caaggcaggt tccagacttc gggtgtgctc actgatccgc
121 ctccagggcc accgccatgt cgagccgcgg tgggaagaag aagtccacca agacgtccag
181 gtctgccaaa gcaggagtca tctttcccgt ggggcggatg ctgcggtaca tcaagaaagg
241 ccaccccaag tacaggattg gagtgggggc acccgtgtac atggccgccg tcctggaata
301 cctgacagcg gagattctgg agctggctgg caatgcagcg agagacaaca agaagggacg
361 ggtcacaccc cggcacatcc tgctggctgt ggccaatgat gaagagctga atcagctgct
421 aaaaggagtc accatagcca gtgggggtgt gttacccaac atccaccccg agttgctagc
481 gaagaagcgg ggatccaaag gaaagttgga agccatcatc acaccacccc cagccaaaaa
541 ggccaagtct ccatcccaga agaagcctgt atctaaaaaa gcaggaggca agaaaggggc
601 ccggaaatcc aagaagaagc agggtgaagt cagtaaggca gccagcgccg acagcacaac
661 cgagggcaca cctgccgacg gcttcacagt cctctccacc aagagcctct tccttggcca
721 gaagctgaac cttattcaca gtgaaatcag taatttagcc ggctttgagg tggaggccat
781 aatcaatcct accaatgctg acattgacct taaagatgac ctaggaaaca cgctggagaa
841 gaaaggtggc aaggagtttg tggaagctgt cctggaactc cggaaaaaga acgggccctt
901 ggaagtagct ggagctgctg tcagcgcagg ccatggcctg cctgccaagt ttgtgatcca
961 ctgtaatagt ccagtttggg gtgcagacaa gtgtgaagaa cttctggaaa agacagtgaa
1021 aaactgcttg gccctggctg atgataagaa gctgaaatcc attgcatttc catccatcgg
1081 cagcggcagg aacggttttc caaagcagac agcagctcag ctgattctga aggccatctc
1141 cagttacttc gtgtctacaa tgtcctcttc catcaaaacg gtgtacttcg tgctttttga
1201 cagcgagagt ataggcatct atgtgcagga aatggccaag ctggacgcca actaggctga
1261 gcaatgacag aaccagctgc accatgtacc ccaccttcag tttaaaagaa aaaaaaaaaa
1321 aaaaaaaaaa aaaaaaa
//